当前解析结果
SmilChr05G001227| 统一新 Gene ID | SmilChr05G001227 |
|---|---|
| 名称 | SmilChr05G001227 |
| 描述 | uncharacterized SmilChr05G001227 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10358360 - 10359964 / - |
| NCBI Gene ID | LOC130985925 |
|---|---|
| GeneID | 130985925 |
| locus_tag | - |
| NCBI Name | LOC130985925 |
| 原始查询 | SmilChr05G001227 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Pollen Ole e 1 allergen and extensin family protein [Source:NCBI gene (formerly Entrezgene);Acc:834814]; symbol=AT5G47635; hit=AT5G47635; species=arabidopsis; confidence=medium |
| 产物 | Pollen Ole e 1 allergen and extensin family protein [Source:NCBI gene (formerly Entrezgene);Acc:834814]; symbol=AT5G47635; hit=AT5G47635; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G47635 (AT5G47635)Pollen Ole e 1 allergen and extensin family protein [Source:NCBI gene (formerly Entrezgene);Acc:834814] identity=43.9; qcov=0.8; evalue=5.78e-31; confidence=medium |
| Rice | Os10g0208600- identity=42.3; qcov=0.83; evalue=3.18e-26; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985925 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057765087.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057765087.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765087.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765087.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765087.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10358490 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B75 |
Chr5:10358490 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B75 |
Chr5:10358633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,C70 |
Chr5:10359492 |
C |
CA |
1bp_insertion | frameshift_variant | 5 | B129,C19,C21,C31,C41 |
Chr5:10359492 |
C |
CA |
1bp_insertion | CDS_variant | 5 | B129,C19,C21,C31,C41 |
Chr5:10359582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B56,B6,C12 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。