Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001231

染色体: Chr05 坐标: 10396363-10400777 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001231
名称SmilChr05G001231
描述uncharacterized SmilChr05G001231
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向10396363 - 10400777 / -

ID 对照

NCBI Gene IDLOC130985928
GeneID130985928
locus_tag-
NCBI NameLOC130985928
原始查询SmilChr05G001231

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os06g0165300; species=rice; confidence=weak
产物hit=Os06g0165300; species=rice; confidence=weak
ArabidopsisAT2G15420 (AT2G15420)
myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816034]
identity=30; qcov=0.185; evalue=1.82e-06; confidence=weak
RiceOs06g0165300
-
identity=28.4; qcov=0.144; evalue=5.91e-08; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130985928

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057765089.1
2 Nucleoplasm 核质 0.20000 XP_057765089.1
3 Chromosome 染色体 0.00000 XP_057765089.1
4 Centromere 着丝粒 0.00000 XP_057765089.1
5 Chromatin 染色质 0.00000 XP_057765089.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:10396830 C CA 1bp_insertion frameshift_variant 4 A8,B125,B35,C35
Chr5:10396830 C CA 1bp_insertion CDS_variant 4 A8,B125,B35,C35
Chr5:10396891 C T EMS_canonical_SNV CDS_variant 1 D9
Chr5:10397193 C T EMS_canonical_SNV CDS_variant 3 B103,C18,C29
Chr5:10397199 AG A 1bp_deletion frameshift_variant 55 A6,B1,B101,B106,B107,B108,B113,B119,B122,B125,B126,B133,B140,B16,B18,B25,B33,B34,B4,B42,B43,B6,B64,B68,B70,B71,B72,B73,B90,B92,B95,B97,B98,C14,C20,C22,C24,C25,C27,C36,C4,C42,C47,C48,C51,C6,C62,C67,C70,C73,C78,C86,C9,D5,D8
Chr5:10397203 C CT 1bp_insertion frameshift_variant 55 A6,B1,B101,B106,B107,B108,B113,B119,B122,B125,B126,B133,B140,B16,B18,B25,B33,B34,B4,B42,B43,B6,B64,B68,B70,B71,B72,B73,B90,B92,B95,B97,B98,C14,C20,C22,C24,C25,C27,C36,C4,C42,C47,C48,C51,C6,C62,C67,C70,C73,C78,C86,C9,D5,D8
Chr5:10397278 G A EMS_canonical_SNV CDS_variant 3 B107,B122,B88
Chr5:10397389 C T EMS_canonical_SNV CDS_variant 1 B97
Chr5:10397399 G A EMS_canonical_SNV CDS_variant 4 B107,B122,B73,C86
Chr5:10397951 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:10397968 C T EMS_canonical_SNV CDS_variant 3 C39,C44,C65
Chr5:10398035 G A EMS_canonical_SNV CDS_variant 1 C26

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909106.1
TATCAACGCTGACTCACCCCCTCTTTTTAGCAATTCTAGTTTCTTAACCAGCCTTGGCCCCTTTTAGCGAATTTTCTTCCTTAGTAATTTTATTTTTAACATTCAAAAGTTGCCCTAGAGTTACCGTTCCCTCTCATTTCATTTTTTTTTCTCGCTCAATACGCAGCGGCGCGCTTCACATGGGTTTTCTCCTGATTCGCTATCACTCCTCTTCCCACCTTGCATACCTTCCTTTTTCCTGAAGTTCCTCGCGATTCAAC...
XM_057909107.1
TATCAACGCTGACTCACCCCCTCTTTTTAGCAATTCTAGTTTCTTAACCAGCCTTGGCCCCTTTTAGCGAATTTTCTTCCTTAGTAATTTTATTTTTAACATTCAAAAGTTGCCCTAGAGTTACCGTTCCCTCTCATTTCATTTTTTTTTCTCGCTCAATACGCAGCGGCGCGCTTCACATGGGTTTTCTCCTGATTCGCTATCACTCCTCTTCCCACCTTGCATACCTTCCTTTTTCCTGAAGTTCCTCGCGATTCAAC...

CDS

2 records

下载 CDS FASTA
LOC130985928
ATGTCTACAGTAGGTGCGGAGCAAAATTTGATAAATCGTCAACAGGATATGCGATGTACTAGCTTATCCTCCTCGACTTTGAGACATAGAGATTTGAAGGAAATCAGAGAAATTCTTGGGGGGTATCCTTCTATTCTAGAAGTTAGGCTTCCTCGGTCTAGGGATGAACGTCCAGATAACTGTAGGGAGGATTCAATTCCTTTGTGGAAGAATCATATAGATGCGGGATTACGCTTGCCTCCTCCCCCTTTTATCTTAGA...
LOC130985928
ATGTCTACAGTAGGTGCGGAGCAAAATTTGATAAATCGTCAACAGGATATGCGATGTACTAGCTTATCCTCCTCGACTTTGAGACATAGAGATTTGAAGGAAATCAGAGAAATTCTTGGGGGGTATCCTTCTATTCTAGAAGTTAGGCTTCCTCGGTCTAGGGATGAACGTCCAGATAACTGTAGGGAGGATTCAATTCCTTTGTGGAAGAATCATATAGATGCGGGATTACGCTTGCCTCCTCCCCCTTTTATCTTAGA...

Protein

2 records

下载 Protein FASTA
XP_057765089.1
MSTVGAEQNLINRQQDMRCTSLSSSTLRHRDLKEIREILGGYPSILEVRLPRSRDERPDNCREDSIPLWKNHIDAGLRLPPPPFILEVSRLFGIPFFQISPGAMRRALAFHIVCHVNGIQNTARLFFKTQVLRKTGIHYHFNSNPKHKIEFLSGLGSRDKGWLGKYFFVTIKEGGWRSLVGDSEIKWHPYKHTPPSPRSLPRHNEFAVFHGLNKRHDSGKLDCKAMIESATVLAGSALFSVYPRDKIGMSWKLNSGAIVP...
XP_057765090.1
MSTVGAEQNLINRQQDMRCTSLSSSTLRHRDLKEIREILGGYPSILEVRLPRSRDERPDNCREDSIPLWKNHIDAGLRLPPPPFILEVSRLFGIPFFQISPGAMRRALAFHIVCHVNGIQNTARLFFKTQVLRKTGIHYHFNSNPKHKIEFLSGLGSRDKGWLGKYFFVTIKEGGWRSLVGDSEIKWHPYKHTPPSPRSLPRHNEFAVFHGLNKRHDSGKLDCKAMIESATVLAGSALFSVYPRDKIGMSWKLNSGAIVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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