Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001245`

染色体: Chr05 坐标: 10565831-10569150 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001245`
名称	SmilChr05G001245
描述	phosphoglycolate phosphatase 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	10565831 - 10569150 / `-`

ID 对照

NCBI Gene ID	`LOC130985941`
GeneID	`130985941`
locus_tag	`-`
NCBI Name	`LOC130985941`
原始查询	`SmilChr05G001245`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoglycolate phosphatase 2
产物	phosphoglycolate phosphatase 2
Arabidopsis	`AT5G47760` (PGLP2) 2-phosphoglycolate phosphatase 2 [Source:NCBI gene (formerly Entrezgene);Acc:834827] identity=75; qcov=0.945; evalue=3.46e-169; confidence=high
Rice	`Os09g0261300` (B1077E10.18-1) - identity=69.6; qcov=0.948; evalue=1.86e-156; confidence=high
GO	GO:0016791 (phosphatase activity)
KEGG	smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00702 (Hydrolase); PF13242 (Hydrolase_like); PF13344 (Hydrolase_6); PF13419 (HAD_2)
InterPro	-
eggNOG	-
NR	GeneID:130985941

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057765117.1`
2	Mitochondrion	线粒体	1.00000	`XP_057765117.1`
3	Cytoplasm	细胞质	0.60000	`XP_057765117.1`
4	Nucleus	细胞核	0.00000	`XP_057765117.1`
5	Chromosome	染色体	0.00000	`XP_057765117.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:10566019`	`T`	`TTA`	2bp_insertion	frameshift_variant	1	B126
`Chr5:10566019`	`T`	`TTA`	2bp_insertion	CDS_variant	1	B126
`Chr5:10566078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr5:10566386`	`GT`	`G`	1bp_deletion	frameshift_variant	2	B72,B9
`Chr5:10566386`	`GT`	`G`	1bp_deletion	CDS_variant	2	B72,B9
`Chr5:10566475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr5:10567499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B138,B17,B24
`Chr5:10568411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:10568421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:10568754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,B12,B131,B140
`Chr5:10568805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:10568808`	`TG`	`T`	1bp_deletion	CDS_variant	1	B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765117.1

309 aa

154

309

Hydrolase

Hydrolase_6

HAD_2

Hydrolase_like

PF00702 Hydrolase 30-269 aa PF13344 Hydrolase_6 32-134 aa PF13419 HAD_2 190-275 aa PF13242 Hydrolase_like 229-303 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765117.1`	Pfam	`PF00702`	Hydrolase	Domain	30	269	4.9e-16	60.4	haloacid dehalogenase-like hydrolase
`XP_057765117.1`	Pfam	`PF13344`	Hydrolase_6	Domain	32	134	1e-34	119.3	Haloacid dehalogenase-like hydrolase
`XP_057765117.1`	Pfam	`PF13419`	HAD_2	Family	190	275	2.6e-09	38.1	Haloacid dehalogenase-like hydrolase
`XP_057765117.1`	Pfam	`PF13242`	Hydrolase_like	Domain	229	303	1.5e-22	80.0	HAD-hyrolase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909134.1
TTCAAAAAAGTCAAAAATAGAAACTCATGAACTGGTGATATATCACATCTGCCAACTGGTAGAAATTTAGAAGCAAATCGGAAAACTAGAATAAAGGGGGAAACAAATGTAAAGCGTAAAGCGCCAAAAATATGTTTGAATCTGCTTCGCATGTTGTCCACTTCCTTCTTGCTCTTTTTTCTTTTTTATTCTTTTAAATATTCACTGATTTACTCACAATATTGATTAAAACTTATAACCTCCCAATCACCACTTCGCCC...

CDS

1 records

下载 CDS FASTA

LOC130985941
ATGGCAGGAGATCTCTCGCAATCAACGGTTTATGAAAACTCTCAGCGCCTTACTCCTCAGAACACTGAACGTCTCCTCGATTCCGTTGAAGCTTTTCTCTTCGACTGCGATGGTGTGATATGGAAAGGAGATTCTCTCATCGACGGTGTTTCGGATACTCTGGATATGCTCCGATCCATGGGGAAAAAGCTTGTTTTTGTGACGAATAATTCGACCAAGTCTAGAAGGCAATATGCTAAGAAGTTCCATTCTGTTGGCAT...

Protein

1 records

下载 Protein FASTA

XP_057765117.1
MAGDLSQSTVYENSQRLTPQNTERLLDSVEAFLFDCDGVIWKGDSLIDGVSDTLDMLRSMGKKLVFVTNNSTKSRRQYAKKFHSVGISVSEDEIFSSSFAAAMYLKVKEFPKEKKVYVIGEEGILEELELAGFTPLGGPEDGKKTAHMKPNSFFEHDKNVGAVVVGLDQHINFYKLQYGTLCIRENPGCLFIATNRDAVGNLTDLQEWPGAGCMVAAICGTTQKEPIVVGKPSTFLMDFLLEKFNIPTSKMCMVGDRLDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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