Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001256`

染色体: Chr05 坐标: 10691963-10699580 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001256`
名称	SmilChr05G001256
描述	calcineurin B-like protein 3
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	10691963 - 10699580 / `+`

ID 对照

NCBI Gene ID	`LOC130985949`
GeneID	`130985949`
locus_tag	`-`
NCBI Name	`LOC130985949`
原始查询	`SmilChr05G001256`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcineurin B-like protein 3
产物	calcineurin B-like protein 3
Arabidopsis	`AT4G26570` (CBL3) calcineurin B-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:828764] identity=88; qcov=1; evalue=6.6e-146; confidence=high
Rice	`Os03g0626800` (OsCBL3) - identity=88.9; qcov=1; evalue=7.09e-149; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG	-
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130985949

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057765166.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057765166.1`
3	Cytoplasm	细胞质	0.60000	`XP_057765164.1`
4	Cell membrane	细胞膜	0.20000	`XP_057765164.1`
5	Cytosol	细胞质基质	0.20000	`XP_057765166.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:10694281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,C70,D10
`Chr5:10698398`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B6
`Chr5:10698398`	`GA`	`G`	1bp_deletion	CDS_variant	1	B6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765164.1

243 aa

122

243

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF13202 EF-hand_5 107-126 aa PF13833 EF-hand_8 107-127 aa PF13833 EF-hand_8 173-208 aa PF13202 EF-hand_5 185-209 aa PF00036 EF-hand_1 185-211 aa

XP_057765165.1

243 aa

122

243

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF13202 EF-hand_5 107-126 aa PF13833 EF-hand_8 107-127 aa PF13833 EF-hand_8 173-208 aa PF13202 EF-hand_5 185-209 aa PF00036 EF-hand_1 185-211 aa

XP_057765166.1

226 aa

113

226

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF13833 EF-hand_8 64-110 aa PF13202 EF-hand_5 88-109 aa PF13833 EF-hand_8 156-191 aa PF13202 EF-hand_5 168-192 aa PF00036 EF-hand_1 168-194 aa

XP_057765167.1

226 aa

113

226

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF13833 EF-hand_8 64-110 aa PF13202 EF-hand_5 88-109 aa PF13833 EF-hand_8 156-191 aa PF13202 EF-hand_5 168-192 aa PF00036 EF-hand_1 168-194 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765164.1`	Pfam	`PF13202`	EF-hand_5	Domain	107	126	2.3e-17	62.3	EF hand
`XP_057765164.1`	Pfam	`PF13833`	EF-hand_8	Domain	107	127	1.4e-07	31.8	EF-hand domain pair
`XP_057765164.1`	Pfam	`PF13833`	EF-hand_8	Domain	173	208	1.4e-07	31.8	EF-hand domain pair
`XP_057765164.1`	Pfam	`PF13202`	EF-hand_5	Domain	185	209	2.3e-17	62.3	EF hand
`XP_057765164.1`	Pfam	`PF00036`	EF-hand_1	Domain	185	211	7.4e-20	69.7	EF hand domain
`XP_057765165.1`	Pfam	`PF13202`	EF-hand_5	Domain	107	126	2.3e-17	62.3	EF hand
`XP_057765165.1`	Pfam	`PF13833`	EF-hand_8	Domain	107	127	1.4e-07	31.8	EF-hand domain pair
`XP_057765165.1`	Pfam	`PF13833`	EF-hand_8	Domain	173	208	1.4e-07	31.8	EF-hand domain pair
`XP_057765165.1`	Pfam	`PF13202`	EF-hand_5	Domain	185	209	2.3e-17	62.3	EF hand
`XP_057765165.1`	Pfam	`PF00036`	EF-hand_1	Domain	185	211	7.4e-20	69.7	EF hand domain
`XP_057765166.1`	Pfam	`PF13833`	EF-hand_8	Domain	64	110	1e-07	32.3	EF-hand domain pair
`XP_057765166.1`	Pfam	`PF13202`	EF-hand_5	Domain	88	109	1.8e-17	62.7	EF hand
`XP_057765166.1`	Pfam	`PF13833`	EF-hand_8	Domain	156	191	1e-07	32.3	EF-hand domain pair
`XP_057765166.1`	Pfam	`PF13202`	EF-hand_5	Domain	168	192	1.8e-17	62.7	EF hand
`XP_057765166.1`	Pfam	`PF00036`	EF-hand_1	Domain	168	194	5.5e-20	70.1	EF hand domain
`XP_057765167.1`	Pfam	`PF13833`	EF-hand_8	Domain	64	110	1e-07	32.3	EF-hand domain pair
`XP_057765167.1`	Pfam	`PF13202`	EF-hand_5	Domain	88	109	1.8e-17	62.7	EF hand
`XP_057765167.1`	Pfam	`PF13833`	EF-hand_8	Domain	156	191	1e-07	32.3	EF-hand domain pair
`XP_057765167.1`	Pfam	`PF13202`	EF-hand_5	Domain	168	192	1.8e-17	62.7	EF hand
`XP_057765167.1`	Pfam	`PF00036`	EF-hand_1	Domain	168	194	5.5e-20	70.1	EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057909183.1
CAAACGGTGTTGCCCATGATATATTACTATCAAATCAAATTAAACTTACCTACCTCCATCTTTCTCTAGGTTTCCGTGCCAACAAGTTTAGATTTTTTCATCAATTTTGCTTCTTTTCTCATTTTTTCCGATTTTATTTTTATTTAACTTACCGACTTCCACCAATTTATTACTTTAATTTTTTTAAAATCGGTTCCAATCATTTGTTTGCTGCGTGCTTTCCTCTCTGTTTGGGGGAAAACATAGAAAAACACAAATAT...

XM_057909182.1
CATGATATATTACTATCAAATCAAATTAAACTTACCTACCTCCATCTTTCTCTAGGTTTCCGTGCCAACAAGTTTAGATTTTTTCATCAATTTTGCTTCTTTTCTCATTTTTTCCGATTTTATTTTTATTTAACTTACCGACTTCCACCAATTTATTACTTTAATTTTTTTAAAATCGGTTCCAATCATTTGTTTGCTGCGTGCTTTCCTCTCTGTTTGGGGGAAAACATAGAAAAACACAAATATCCTATTCACAATCT...

CDS

4 records

下载 CDS FASTA

LOC130985949
ATGGTGCAGTTCTTAGACGGGCTGAAACATTTGCTTTCTGCTATTGTAAGTTGTTGTGACTCTGAGATATACAAGCAACCAAGGGGACTGGAAAGTCCTGAAGCTCTAGCGAGGGAAACAGTGTTCAGTGTTAGCGAAATCGAAGCTTTGTATGAATTGTTTAAAAAGATCAGTAGTGCTGTAATCGACGACGGCCTGATTAACAAGGAAGAGTTCCAGCTTGCACTATTTAAAACAAATAAAAAGGAGAGCCTATTTGC...

Protein

4 records

下载 Protein FASTA

XP_057765164.1
MVQFLDGLKHLLSAIVSCCDSEIYKQPRGLESPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVSFHAPNTANSFNMSDRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVMRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT

XP_057765165.1
MVQFLDGLKHLLSAIVSCCDSEIYKQPRGLESPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVSFHAPNTANSFNMSDRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVMRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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