Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001270`

染色体: Chr05 坐标: 10840559-10857094 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001270`
名称	SmilChr05G001270
描述	uncharacterized SmilChr05G001270
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	10840559 - 10857094 / `-`

ID 对照

NCBI Gene ID	`LOC130985965`
GeneID	`130985965`
locus_tag	`-`
NCBI Name	`LOC130985965`
原始查询	`SmilChr05G001270`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0609700; species=rice; confidence=high
产物	hit=Os06g0609700; species=rice; confidence=high
Arabidopsis	`AT4G17150` (AT4G17150) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827425] identity=65.1; qcov=0.998; evalue=0; confidence=high
Rice	`Os06g0609700` - identity=61.2; qcov=1.03; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF02129 (Peptidase_S15); PF12146 (Hydrolase_4)
InterPro	-
eggNOG	-
NR	GeneID:130985965

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057765187.1`
2	Cytoplasm	细胞质	0.40000	`XP_057765191.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057765187.1`
4	Cytosol	细胞质基质	0.40000	`XP_057765197.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057765191.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:10840933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,B131
`Chr5:10840977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B119,B120,C3
`Chr5:10841103`	`ACT`	`A`	2bp_deletion	frameshift_variant	8	A22,B44,B48,B53,B56,B80,B96,C78
`Chr5:10841165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B8
`Chr5:10841180`	`GAT`	`G`	2bp_deletion	frameshift_variant	3	B112,B63,C54
`Chr5:10841180`	`GAT`	`G`	2bp_deletion	CDS_variant	3	B112,B63,C54
`Chr5:10841187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:10841659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B131,C38
`Chr5:10843921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B125,B67
`Chr5:10844678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr5:10845673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765187.1

508 aa

254

508

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-176 aa

XP_057765188.1

508 aa

254

508

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-176 aa

XP_057765189.1

508 aa

254

508

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-176 aa

XP_057765190.1

508 aa

254

508

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-176 aa

XP_057765191.1

496 aa

248

496

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-177 aa

XP_057765192.1

496 aa

248

496

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-177 aa

XP_057765193.1

496 aa

248

496

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-177 aa

XP_057765194.1

496 aa

248

496

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-177 aa

XP_057765195.1

496 aa

248

496

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 67-175 aa PF00561 Abhydrolase_1 67-191 aa PF02129 Peptidase_S15 89-177 aa

XP_057765196.1

471 aa

236

471

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 30-138 aa PF00561 Abhydrolase_1 30-154 aa PF02129 Peptidase_S15 52-140 aa

XP_057765197.1

459 aa

230

459

Hydrolase_4

Abhydrolase_1

Peptidase_S15

PF12146 Hydrolase_4 29-138 aa PF00561 Abhydrolase_1 30-154 aa PF02129 Peptidase_S15 52-140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765187.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	1e-12	48.6	Serine aminopeptidase, S33
`XP_057765187.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	9.4e-07	29.5	alpha/beta hydrolase fold
`XP_057765187.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	176	1.4e-05	25.7	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765188.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	1e-12	48.6	Serine aminopeptidase, S33
`XP_057765188.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	9.4e-07	29.5	alpha/beta hydrolase fold
`XP_057765188.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	176	1.4e-05	25.7	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765189.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	1e-12	48.6	Serine aminopeptidase, S33
`XP_057765189.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	9.4e-07	29.5	alpha/beta hydrolase fold
`XP_057765189.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	176	1.4e-05	25.7	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765190.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	1e-12	48.6	Serine aminopeptidase, S33
`XP_057765190.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	9.4e-07	29.5	alpha/beta hydrolase fold
`XP_057765190.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	176	1.4e-05	25.7	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765191.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	9e-13	48.8	Serine aminopeptidase, S33
`XP_057765191.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	8.6e-07	29.6	alpha/beta hydrolase fold
`XP_057765191.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	177	1.2e-05	25.9	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765192.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	9e-13	48.8	Serine aminopeptidase, S33
`XP_057765192.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	8.6e-07	29.6	alpha/beta hydrolase fold
`XP_057765192.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	177	1.2e-05	25.9	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765193.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	9e-13	48.8	Serine aminopeptidase, S33
`XP_057765193.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	8.6e-07	29.6	alpha/beta hydrolase fold
`XP_057765193.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	177	1.2e-05	25.9	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765194.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	9e-13	48.8	Serine aminopeptidase, S33
`XP_057765194.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	8.6e-07	29.6	alpha/beta hydrolase fold
`XP_057765194.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	177	1.2e-05	25.9	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765195.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	175	9e-13	48.8	Serine aminopeptidase, S33
`XP_057765195.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	67	191	8.6e-07	29.6	alpha/beta hydrolase fold
`XP_057765195.1`	Pfam	`PF02129`	Peptidase_S15	Domain	89	177	1.2e-05	25.9	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765196.1`	Pfam	`PF12146`	Hydrolase_4	Domain	30	138	7.9e-13	49.0	Serine aminopeptidase, S33
`XP_057765196.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	30	154	7.8e-07	29.7	alpha/beta hydrolase fold
`XP_057765196.1`	Pfam	`PF02129`	Peptidase_S15	Domain	52	140	1.3e-05	25.8	X-Pro dipeptidyl-peptidase (S15 family)
`XP_057765197.1`	Pfam	`PF12146`	Hydrolase_4	Domain	29	138	6.8e-13	49.2	Serine aminopeptidase, S33
`XP_057765197.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	30	154	7.1e-07	29.9	alpha/beta hydrolase fold
`XP_057765197.1`	Pfam	`PF02129`	Peptidase_S15	Domain	52	140	1.1e-05	26.1	X-Pro dipeptidyl-peptidase (S15 family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057909207.1
CACGCTCTTCGACTCATAGTCGCGCGGTCGTAGATAATTTTTTCTCTGGTAATCGAGATGGCGGAGGGTTAGAGCTCGGCGACGGCCACCGGGATCCGCCGCTCCTCTTCCTGTTTCTCCGCCGTCCACTGCTCAAGCTTCCTGAAGAAATCACTCTCTCTCAGACTCAGAGGCACTCGATTTCACGTGTAAAGTGAGAAGTAGGGCAGCCGCTTATGCCATGGGTGGAAAATGAAACTCTTCAATTGGGATTTGTTGCT...

XM_057909208.1
TCAATTAGTTTTATGTAGACGAAAAAGGAAAGCAAGGAAGCAAACATATTATAAAACGACAGCGTCGCTGAAGCTTTTAAGGTTTATGTAAAATGCAATTCCATGAAATAAACATGAGAGATGATAGCTGGTTGGTTGGTCTTATGGGAAATTGTGGTCCGTAGCTGTAACGGCGTTACTTTTTCGGAATACCAAACACTATTCGTGCAATCACAAGCAGCTTTTGCACCACCACCGCCATCGCCATCGCCATCACCATC...

CDS

11 records

下载 CDS FASTA

LOC130985965
ATGATTGACCAATTTATTAATTTTGTCATTAGGCCGCCCAGGGCTGATTACAACCCAGATCAATATCTATGGGAAAAAGATTTTACCCTTGCAGGAAGAAAATACAACAGAGAAGATGTGGAGCTTAGTAATGAAAGGGGTCATACCTTAAGATGTAGCCATTACGCTCCTTCACAGGTCCCAGATGATTCGCCTCTCCCTTGTGTCATATATTGCCATGGGAACAGTGGATGTCGGGCAGATGCAAATGAAGCAGCTGT...

Protein

11 records

下载 Protein FASTA

XP_057765187.1
MIDQFINFVIRPPRADYNPDQYLWEKDFTLAGRKYNREDVELSNERGHTLRCSHYAPSQVPDDSPLPCVIYCHGNSGCRADANEAAVVLLPSNITVFTLDFSGSGLSDGDYVSLGWHEKNDLKVVISYLRSNEKVSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFNLMLELADVYKIRLPKFTVKMALQYMRRVIQKKAKFDITRLDCIQVAPKTFIPALFGHAKDDKFIQPRHSDAIFNSYAGDKNIIKFD...

XP_057765188.1
MIDQFINFVIRPPRADYNPDQYLWEKDFTLAGRKYNREDVELSNERGHTLRCSHYAPSQVPDDSPLPCVIYCHGNSGCRADANEAAVVLLPSNITVFTLDFSGSGLSDGDYVSLGWHEKNDLKVVISYLRSNEKVSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFNLMLELADVYKIRLPKFTVKMALQYMRRVIQKKAKFDITRLDCIQVAPKTFIPALFGHAKDDKFIQPRHSDAIFNSYAGDKNIIKFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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