当前解析结果
SmilChr05G001275| 统一新 Gene ID | SmilChr05G001275 |
|---|---|
| 名称 | SmilChr05G001275 |
| 描述 | uncharacterized SmilChr05G001275 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10895001 - 10898602 / - |
| NCBI Gene ID | LOC130985972 |
|---|---|
| GeneID | 130985972 |
| locus_tag | - |
| NCBI Name | LOC130985972 |
| 原始查询 | SmilChr05G001275 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pre-mRNA splicing factor domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819028]; symbol=AT2G44200; hit=AT2G44200; species=arabidopsis; confidence=high |
| 产物 | pre-mRNA splicing factor domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819028]; symbol=AT2G44200; hit=AT2G44200; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G44200 (AT2G44200)pre-mRNA splicing factor domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819028] identity=45.6; qcov=1.04; evalue=9.21e-114; confidence=high |
| Rice | Os08g0500200 (OJ1118_A06.14-1)- identity=65.1; qcov=0.319; evalue=4.54e-58; confidence=low |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0005684 (U2-type spliceosomal complex) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF10197 (Cir_N); PF12542 (CWC25) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985972 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765206.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057765206.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765206.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765206.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765206.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10895211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C8 |
Chr5:10895218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr5:10895322 |
G |
A |
EMS_canonical_SNV | stop_gained | 14 | A11,B107,B29,B32,B40,B44,B54,B97,C26,C36,C48,C77,C87,D8 |
Chr5:10895344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B41,C46 |
Chr5:10895416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,D3 |
Chr5:10895481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D4 |
Chr5:10895610 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D6,D8 |
Chr5:10895672 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C32 |
Chr5:10895672 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C32 |
Chr5:10895748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B68,B91 |
Chr5:10895774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr5:10895810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B41,C46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765206.1PF10197
Cir_N 11-46 aa
PF12542
CWC25 65-155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765206.1 |
Pfam | PF10197 |
Cir_N | Domain | 11 | 46 | 5.2e-14 | 52.9 | N-terminal domain of CBF1 interacting co-repressor CIR |
XP_057765206.1 |
Pfam | PF12542 |
CWC25 | Family | 65 | 155 | 8.8e-09 | 36.8 | Pre-mRNA splicing factor |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。