Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001305`

染色体: Chr05 坐标: 11257937-11267287 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001305`
名称	SmilChr05G001305
描述	ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	11257937 - 11267287 / `-`

ID 对照

NCBI Gene ID	`LOC130986004`
GeneID	`130986004`
locus_tag	`-`
NCBI Name	`LOC130986004`
原始查询	`SmilChr05G001305`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
产物	ATP-dependent zinc metalloprotease FTSH 12%2C chloroplastic
Arabidopsis	`AT1G79560` (FTSH12) FTSH protease 12 [Source:NCBI gene (formerly Entrezgene);Acc:844294] identity=77.1; qcov=0.959; evalue=0; confidence=high
Rice	`Os06g0725900` (OsFtsH1) - identity=31.5; qcov=0.632; evalue=2.69e-79; confidence=low
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0005745 (m-AAA complex); GO:0009535 (chloroplast thylakoid membrane); GO:0009793 (embryo development ending in seed dormancy); GO:0016887 (ATP hydrolysis activity); GO:0034982 (mitochondrial protein processing); GO:0065003 (protein-containing complex assembly)
KEGG	-
Pfam	PF00004 (AAA); PF01434 (Peptidase_M41); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:130986004

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765242.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057765242.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057765242.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.40000	`XP_057765242.1`
5	Nucleus	细胞核	0.00000	`XP_057765242.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:11258646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr5:11261485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr5:11261486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr5:11261659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,C70,D11
`Chr5:11261749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B78
`Chr5:11261809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B101,B54,C35
`Chr5:11263735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:11263777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B19,B61,B79,B8,C44
`Chr5:11263941`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A22
`Chr5:11263941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr5:11263969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr5:11263975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765242.1

984 aa

492

984

AAA

AAA_lid_3

Peptidase_M41

PF00004 AAA 505-641 aa PF17862 AAA_lid_3 664-706 aa PF01434 Peptidase_M41 734-935 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765242.1`	Pfam	`PF00004`	AAA	Domain	505	641	1.3e-33	117.0	ATPase family associated with various cellular activities (AAA)
`XP_057765242.1`	Pfam	`PF17862`	AAA_lid_3	Domain	664	706	5.1e-12	45.8	AAA+ lid domain
`XP_057765242.1`	Pfam	`PF01434`	Peptidase_M41	Domain	734	935	2.5e-22	80.4	Peptidase family M41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909259.1
CTATTAAGATAATAAAGTAGTATTTCAAAATTGAGATAAAACCTTGTAAAACCCATCCCATGCTTCCTCTGTCGAAATGCCAATGGCCCCTCAAAGCAGCTGAGTCGAGACCTGCTGCCAGGTAGAAGAAGAAAATTTATCTGAAACTGCAAATTCCCGGCTATTTTAAGTTGTCCGGAGCAATTTTCTCTGGCTATGGAAATAGCGACACTTCAATGGCGACCAATCCCTCTTCAATGTGCACCATTTTCGGCCAATTG...

CDS

1 records

下载 CDS FASTA

LOC130986004
ATGGAAATAGCGACACTTCAATGGCGACCAATCCCTCTTCAATGTGCACCATTTTCGGCCAATTGCAGGCCCAAAATTTCACGGCGAAAGAGGTTTGTAATTTCAGCCTCTTCAAGTGAGCCAGAAGGGTTCTCTTGGCTGCGGCTTTCGCAGTCCATTCGCCGTGGTTCTCAACGGTTTTTTGAGAATTTGGGGGAGTCGGTAAAGAGAGAAACTGGGTTTGATTTGAAGGTTCCAGTTGATGAGTATTCGGGAAGAGC...

Protein

1 records

下载 Protein FASTA

XP_057765242.1
MEIATLQWRPIPLQCAPFSANCRPKISRRKRFVISASSSEPEGFSWLRLSQSIRRGSQRFFENLGESVKRETGFDLKVPVDEYSGRARESARKAQEKLERVNSELLPQFISWNKWESWKDVKNWDSRRLGALVLYIFVAVFSCQSLFKAVRAPLIEREKRELAEAYMDALIPEPTPTNLKKFKQGLWRKATPRGMKLKRFVEGLDGTLVHDTSFVGENAWEDDAEKAQKSIKKIIEQDSTLNTEDKQVLQEDLGLSVGSQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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