Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001328`

染色体: Chr05 坐标: 11556958-11564678 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001328`
名称	SmilChr05G001328
描述	probable LRR receptor-like serine/threonine-protein kinase At1g56130
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	11556958 - 11564678 / `+`

ID 对照

NCBI Gene ID	`LOC130986026`
GeneID	`130986026`
locus_tag	`-`
NCBI Name	`LOC130986026`
原始查询	`SmilChr05G001328`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At1g56130
产物	probable LRR receptor-like serine/threonine-protein kinase At1g56130
Arabidopsis	`AT1G56130` (AT1G56130) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:842065] identity=57.8; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0203400` (SHR5) - identity=54.2; qcov=0.978; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130986026

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057765275.1`
2	Nucleus	细胞核	0.00000	`XP_057765275.1`
3	Chromosome	染色体	0.00000	`XP_057765275.1`
4	Centromere	着丝粒	0.00000	`XP_057765275.1`
5	Chromatin	染色质	0.00000	`XP_057765275.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:11557384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr5:11557859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:11557882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:11559389`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr5:11559411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B112
`Chr5:11559953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B112
`Chr5:11560411`	`C`	`T`	EMS_canonical_SNV	stop_gained	11	A6,B109,B12,B122,B136,B138,B90,B92,C16,C54,C70
`Chr5:11561730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B112
`Chr5:11562343`	`GA`	`G`	1bp_deletion	frameshift_variant	71	A10,A13,A22,A3,A4,B106,B110,B111,B113,B117,B121,B124,B125,B13,B133,B134,B137,B140,B16,B23,B26,B30,B36,B37,B38,B39,B4,B40,B46,B47,B49,B5,B50,B52,B56,B60,B66,B69,B73,B74,B76,B85,B86,B87,B96,C12,C14,C18,C19,C22,C26,C27,C29,C32,C39,C44,C45,C47,C5,C57,C63,C68,C7,C76,C77,C79,C86,C87,C9,D5,D9
`Chr5:11563446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:11563551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:11563900`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765275.1

1027 aa

514

1027

LRR_14

LRR_1

Malectin

Pkinase

PK_Tyr_Ser-Thr

PF23598 LRR_14 87-210 aa PF00560 LRR_1 130-151 aa PF00560 LRR_1 249-271 aa PF00560 LRR_1 298-316 aa PF00560 LRR_1 321-343 aa PF00560 LRR_1 368-387 aa PF11721 Malectin 432-616 aa PF00069 Pkinase 705-913 aa PF07714 PK_Tyr_Ser-Thr 706-970 aa

XP_057765276.1

1026 aa

513

1026

LRR_14

LRR_1

Malectin

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765275.1`	Pfam	`PF23598`	LRR_14	Repeat	87	210	1.8e-20	73.7	Leucine-rich repeat region
`XP_057765275.1`	Pfam	`PF00560`	LRR_1	Repeat	130	151	9.7e-19	64.2	Leucine Rich Repeat
`XP_057765275.1`	Pfam	`PF00560`	LRR_1	Repeat	249	271	9.7e-19	64.2	Leucine Rich Repeat
`XP_057765275.1`	Pfam	`PF00560`	LRR_1	Repeat	298	316	9.7e-19	64.2	Leucine Rich Repeat
`XP_057765275.1`	Pfam	`PF00560`	LRR_1	Repeat	321	343	9.7e-19	64.2	Leucine Rich Repeat
`XP_057765275.1`	Pfam	`PF00560`	LRR_1	Repeat	368	387	9.7e-19	64.2	Leucine Rich Repeat
`XP_057765275.1`	Pfam	`PF11721`	Malectin	Domain	432	616	4.2e-40	138.2	Malectin domain
`XP_057765275.1`	Pfam	`PF00069`	Pkinase	Domain	705	913	4e-44	151.7	Protein kinase domain
`XP_057765275.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	706	970	2.9e-44	152.0	Protein tyrosine and serine/threonine kinase
`XP_057765276.1`	Pfam	`PF23598`	LRR_14	Repeat	87	210	1.8e-20	73.7	Leucine-rich repeat region
`XP_057765276.1`	Pfam	`PF00560`	LRR_1	Repeat	130	151	9.6e-19	64.2	Leucine Rich Repeat
`XP_057765276.1`	Pfam	`PF00560`	LRR_1	Repeat	249	271	9.6e-19	64.2	Leucine Rich Repeat
`XP_057765276.1`	Pfam	`PF00560`	LRR_1	Repeat	298	316	9.6e-19	64.2	Leucine Rich Repeat
`XP_057765276.1`	Pfam	`PF00560`	LRR_1	Repeat	321	343	9.6e-19	64.2	Leucine Rich Repeat
`XP_057765276.1`	Pfam	`PF00560`	LRR_1	Repeat	368	387	9.6e-19	64.2	Leucine Rich Repeat
`XP_057765276.1`	Pfam	`PF11721`	Malectin	Domain	432	616	4.2e-40	138.2	Malectin domain
`XP_057765276.1`	Pfam	`PF00069`	Pkinase	Domain	705	912	8.4e-45	153.9	Protein kinase domain
`XP_057765276.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	706	969	3.9e-44	151.6	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909292.1
GTAAATTAATCCTGGAATAATGACAAAGGAGCGGCAGGGGCATATTGCAACTATATTCTCTCCATTTTAATTTGGTTCCCTAATCTCATCAAAGGTTTAACATGGCCGTCAAACACACAAACACGGTGGCGCTGCGTCTGTTGTGGTTGTTTTTGGTTTTAGTAGTTGAACTTGATGTGAGTGAAGCACAGAGAAACGCCACCGCACCACTTACTGATCCTGCTGAAGCGAGAGCGATCAATTCAATATTCTCACGGTGG...

XM_057909293.1
TAAATTAATCCTGGAATAATGACAAAGGAGCGGCAGGGGCATATTGCAACTATATTCTCTCCATTTTAATTTGGTTCCCTAATCTCATCAAAGGTTTAACATGGCCGTCAAACACACAAACACGGTGGCGCTGCGTCTGTTGTGGTTGTTTTTGGTTTTAGTAGTTGAACTTGATGTGAGTGAAGCACAGAGAAACGCCACCGCACCACTTACTGATCCTGCTGAAGCGAGAGCGATCAATTCAATATTCTCACGGTGGC...

CDS

2 records

下载 CDS FASTA

LOC130986026
ATGGCCGTCAAACACACAAACACGGTGGCGCTGCGTCTGTTGTGGTTGTTTTTGGTTTTAGTAGTTGAACTTGATGTGAGTGAAGCACAGAGAAACGCCACCGCACCACTTACTGATCCTGCTGAAGCGAGAGCGATCAATTCAATATTCTCACGGTGGCGGATCAGGGCGAACGACAGATGGAATACAAGCGGCGACTTATGCAGCGGAATCGCTAGTGATAGCAGCACCCCCTTGGATTACAGTCCCGGCATCAAGTG...

Protein

2 records

下载 Protein FASTA

XP_057765275.1
MAVKHTNTVALRLLWLFLVLVVELDVSEAQRNATAPLTDPAEARAINSIFSRWRIRANDRWNTSGDLCSGIASDSSTPLDYSPGIKCDCSYNSSTLCHIYSLRVYSMSDWDSSSNVVGELPEELWTLTYLTNLDLGQNYLTGSLPPSVANLTRMQYLRVGINALSGELPKELGKLTDLRSLAIGTSNFSGPLPSELGNCTRLEELWIDSSGVSGAIPLSFAGLQNMKIMFASDVAFTGPIPDFIGSWSNLTVLRFEGNSF...

XP_057765276.1
MAVKHTNTVALRLLWLFLVLVVELDVSEAQRNATAPLTDPAEARAINSIFSRWRIRANDRWNTSGDLCSGIASDSSTPLDYSPGIKCDCSYNSSTLCHIYSLRVYSMSDWDSSSNVVGELPEELWTLTYLTNLDLGQNYLTGSLPPSVANLTRMQYLRVGINALSGELPKELGKLTDLRSLAIGTSNFSGPLPSELGNCTRLEELWIDSSGVSGAIPLSFAGLQNMKIMFASDVAFTGPIPDFIGSWSNLTVLRFEGNSF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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