当前解析结果
SmilChr05G001334| 统一新 Gene ID | SmilChr05G001334 |
|---|---|
| 名称 | SmilChr05G001334 |
| 描述 | uncharacterized SmilChr05G001334 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 11716333 - 11719726 / + |
| NCBI Gene ID | LOC130986032 |
|---|---|
| GeneID | 130986032 |
| locus_tag | - |
| NCBI Name | LOC130986032 |
| 原始查询 | SmilChr05G001334 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842061]; symbol=AT1G56090; hit=AT1G56090; species=arabidopsis; confidence=high |
| 产物 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842061]; symbol=AT1G56090; hit=AT1G56090; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G56090 (AT1G56090)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842061] identity=56.8; qcov=1.05; evalue=2.07e-86; confidence=high |
| Rice | Os04g0616100- identity=52.7; qcov=0.834; evalue=2.3e-54; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986032 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057765281.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057765281.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057765281.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057765281.1 |
| 5 | Cell projection | 细胞突起 | 0.20000 | XP_057765281.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:11716803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B19,B61,B8 |
Chr5:11718910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C44,C73,C82,D6 |
Chr5:11718911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:11719043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C26,C8 |
Chr5:11719049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。