Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001362`

染色体: Chr05 坐标: 12108986-12116275 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001362`
名称	SmilChr05G001362
描述	BTB/POZ domain-containing protein At1g04390
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	12108986 - 12116275 / `-`

ID 对照

NCBI Gene ID	`LOC130986056`
GeneID	`130986056`
locus_tag	`-`
NCBI Name	`LOC130986056`
原始查询	`SmilChr05G001362`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ domain-containing protein At1g04390
产物	BTB/POZ domain-containing protein At1g04390
Arabidopsis	`AT1G04390` (AT1G04390) BTB/POZ domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839530] identity=40.4; qcov=0.998; evalue=0; confidence=medium
Rice	`Os06g0674800` - identity=30.9; qcov=0.344; evalue=1.16e-29; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00651 (BTB); PF26522 (ARM_6)
InterPro	-
eggNOG	-
NR	GeneID:130986056

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057765311.1`
2	Nucleus	细胞核	0.80000	`XP_057765309.1`
3	Cytosol	细胞质基质	0.80000	`XP_057765311.1`
4	Chromosome	染色体	0.00000	`XP_057765309.1`
5	Centromere	着丝粒	0.00000	`XP_057765309.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:12109707`	`TAG`	`T`	2bp_deletion	frameshift_variant	1	A3
`Chr5:12109707`	`TAG`	`T`	2bp_deletion	CDS_variant	1	A3
`Chr5:12109730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B49,B54
`Chr5:12110531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr5:12111173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:12111231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:12111307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr5:12111365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:12111727`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B13
`Chr5:12111727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:12111738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr5:12112125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B79,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765309.1

1010 aa

505

1010

ARM_6

BTB

PF26522 ARM_6 131-243 aa PF00651 BTB 838-893 aa

XP_057765311.1

874 aa

437

874

ARM_6

BTB

PF26522 ARM_6 1-107 aa PF00651 BTB 702-757 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765309.1`	Pfam	`PF26522`	ARM_6	Repeat	131	243	3.4e-38	130.9	Plant ARM repeat
`XP_057765309.1`	Pfam	`PF00651`	BTB	Domain	838	893	3.1e-08	34.5	BTB/POZ domain
`XP_057765311.1`	Pfam	`PF26522`	ARM_6	Repeat	1	107	5.7e-36	123.7	Plant ARM repeat
`XP_057765311.1`	Pfam	`PF00651`	BTB	Domain	702	757	2.8e-08	34.6	BTB/POZ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909326.1
CCTGATAGATGTTAAAATTAAAACGAAACACCAACGCCCTCGGTGGTTGGACTATTTAGCTAGAAAAAGAGTTGGGTTGGGTCGTAGAAGACGTATAAACTCTCAACTCCTCTTCAATGGCGGTTTCAGTCGTGCGCTTTCTACAATAAATTTGTCTTATCCACTGGAGTAGGTCCGAACGATTTTCCCGATTCAACCAGGAGCGGCGACAGCCGTCGAGTATAATCATGCGATCGTCCGCGAAGCACGACCACAACCGC...

XM_057909328.1
AAGCTGGGAGAGGAAAGAGAAATGGAATTGTTCAGACATTGAGATACAAAGACAAGTGCTTCGTTCAATTGATGCGTTCCTCGAGTGTATCTCTAGCGAAACATTGCAATACCCGCTTGTCAAGTCAGAGCAATCAAGAGCATATTGGAGTTCAAAAGTCAATCAATACTGAGGCTGGCTTCTACTGTTACTGTAAAGCTGGTTAATTTTTTGCCTAGTTCAATACTGCATATTCATGTCCTGGATCTACTCTATCCTTT...

CDS

2 records

下载 CDS FASTA

LOC130986056
ATGCGATCGTCCGCGAAGCACGACCACAACCGCGGCATAAGCGGCCACGTCCTCACCCTCCACCAACGCCTTTACCACGCCCTCAACCTCGGAAGCTGGGAGAGGAAAGAGAAATGGAATTGTTCAGACATTGAGATACAAAGACAAGTGCTTCGTTCAATTGATGCGTTCCTCGAGTGTATCTCTAGCGAAACATTGCAATACCCGCTTGTCAAGGATTCGGTGGTTGATATAGTCAGAGCAATCAAGAGCATATTGGA...

LOC130986056
ATGTCATGTGCCGCATCCACGAATGTCATTCTATCCAAGTTAAGTTCTAGACAAGAGAGAGAAGCGTGGCATCTTCTGAAGGAAGCAAATGCAGTTAGTTGTATTATCCAAAATATCAAGCAGTTCTATATAGAGGGAAAACCAATTGAGTACTTTCAAGAGATGTCATTTGTTTTGAGTAAAATATTGTGGAAGTGCTCATCCTTTAGATACTCTGTGTGGAATGATTCTGAGTTCTTAGACATCTTGGATGCTATCAT...

Protein

2 records

下载 Protein FASTA

XP_057765309.1
MRSSAKHDHNRGISGHVLTLHQRLYHALNLGSWERKEKWNCSDIEIQRQVLRSIDAFLECISSETLQYPLVKDSVVDIVRAIKSILEFKSQSILRLASTVTVKLVNFLPSSILHIHVLDLLYPLADLLSCQQWQVAMSCAASTNVILSKLSSRQEREAWHLLKEANAVSCIIQNIKQFYIEGKPIEYFQEMSFVLSKILWKCSSFRYSVWNDSEFLDILDAIIQSENSVIVAVLQLYSSLALCVNGAEKLLKKGEHFLEM...

XP_057765311.1
MSCAASTNVILSKLSSRQEREAWHLLKEANAVSCIIQNIKQFYIEGKPIEYFQEMSFVLSKILWKCSSFRYSVWNDSEFLDILDAIIQSENSVIVAVLQLYSSLALCVNGAEKLLKKGEHFLEMVVRCMDSSNTDSVRTEAFKLARCLALSRRGSTKMLKICSESLVKAIISALKSRSSTAEKSAKTQSSFVEEACRLASITFWVGDHHMHFWEAGVDRVLLDLLLEDYPKVHKMQRESSLNDLIIVVQESHEANFLLSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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