Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001401

染色体: Chr05 坐标: 12601265-12602322 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001401
名称SmilChr05G001401
描述uncharacterized SmilChr05G001401
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向12601265 - 12602322 / -

ID 对照

NCBI Gene IDLOC130986093
GeneID130986093
locus_tag-
NCBI NameLOC130986093
原始查询SmilChr05G001401

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述C2H2 type zinc finger transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:835719]; symbol=AT5G56200; hit=AT5G56200; species=arabidopsis; confidence=low
产物C2H2 type zinc finger transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:835719]; symbol=AT5G56200; hit=AT5G56200; species=arabidopsis; confidence=low
ArabidopsisAT5G56200 (AT5G56200)
C2H2 type zinc finger transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:835719]
identity=46.9; qcov=0.448; evalue=5.89e-16; confidence=low
RiceOs02g0293900 (OJ1057_D08.30)
-
identity=75; qcov=0.177; evalue=2.72e-12; confidence=weak
GO-
KEGG-
PfamPF00096 (zf-C2H2); PF13894 (zf-C2H2_4); PF13912 (zf-C2H2_6)
InterPro-
eggNOG-
NRGeneID:130986093

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057765358.1
2 Chromosome 染色体 0.00000 XP_057765358.1
3 Centromere 着丝粒 0.00000 XP_057765358.1
4 Chromatin 染色质 0.00000 XP_057765358.1
5 Telomere 端粒 0.00000 XP_057765358.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765358.1
181 aa
N
1
90
181
zf-C2H2_4
zf-C2H2_6
zf-C2H2
zf-C2H2_6
C
PF13894 zf-C2H2_4 18-39 aa PF13912 zf-C2H2_6 18-39 aa PF00096 zf-C2H2 57-76 aa PF13912 zf-C2H2_6 57-80 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765358.1 Pfam PF13894 zf-C2H2_4 Domain 18 39 1.3e-07 32.4 C2H2-type zinc finger
XP_057765358.1 Pfam PF13912 zf-C2H2_6 Domain 18 39 6.6e-17 61.7 C2H2-type zinc finger
XP_057765358.1 Pfam PF00096 zf-C2H2 Domain 57 76 9.4e-06 26.5 Zinc finger, C2H2 type
XP_057765358.1 Pfam PF13912 zf-C2H2_6 Domain 57 80 6.6e-17 61.7 C2H2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057909375.1
TAAAGGTTAACTATTTAGTGAAAATATACGTGGAGTTTAATTATACATTAAAATGAAGGAAATAATTGAAGGAATAAAATCTGAATATTGATGTGTAATTATTAAAAACGTGAGATACACACGTATTGTTGTGAGAGAGAATAAGAGGCAAAGTAAGGGTGGAGGAACGTGACGCTTCATTTGTAAATAGCACTTAACTCAAACTCGTCTTCATCAAAATCCTCTCACTCTTTCTTCCACTTTTCTTTCTCTTCATTTTC...

CDS

1 records

下载 CDS FASTA
LOC130986093
ATGAAGAAAGATAAGCAGAAATCAGATGTTTTGGGGGAAGAAGAGGAAAGGGTTTGTTGTATATGTGAGAAAGCGTTTAGGTCAGGTAAAGCTCTAGGAGGTCACATGAGAAGTCACGTGATGAAGAAGAAGAAGAAGAAGAAGATGGATTGTGAGATGATGATGAAGAAATGCAGTGAGTGTGGTAAGAAATTCCCATCGATGAAGTCGTTGTTTGGGCACATGAGGTGCCATCCCGAGAGGGATTGGAGGGGAATCAA...

Protein

1 records

下载 Protein FASTA
XP_057765358.1
MKKDKQKSDVLGEEEERVCCICEKAFRSGKALGGHMRSHVMKKKKKKKMDCEMMMKKCSECGKKFPSMKSLFGHMRCHPERDWRGINPPESLRGWPLTAKRRRNPNHRLRNAVNFLMTLASPQVEQIGGESVEQLKVLKKKKKRRKKVKLCDLNLLENDKNNHTNLLDFDLNEVPPSISSC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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