Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001408`

染色体: Chr05 坐标: 12696290-12698729 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001408`
名称	SmilChr05G001408
描述	probable calcium-binding protein CML21
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	12696290 - 12698729 / `+`

ID 对照

NCBI Gene ID	`LOC130986101`
GeneID	`130986101`
locus_tag	`-`
NCBI Name	`LOC130986101`
原始查询	`SmilChr05G001408`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML21
产物	probable calcium-binding protein CML21
Arabidopsis	`AT4G26470` (AT4G26470) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:828753] identity=72; qcov=0.969; evalue=1.37e-108; confidence=high
Rice	`Os06g0609600` - identity=69.3; qcov=1; evalue=4.81e-112; confidence=high
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130986101

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057765369.1`
2	Cell membrane	细胞膜	0.60000	`XP_057765369.1`
3	Cytoplasm	细胞质	0.20000	`XP_057765369.1`
4	Nucleus	细胞核	0.00000	`XP_057765369.1`
5	Chromosome	染色体	0.00000	`XP_057765369.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:12697365`	`GC`	`G`	1bp_deletion	frameshift_variant	114	A13,A15,A18,A22,A24,A3,A5,A6,A7,A8,B1,B10,B101,B105,B106,B109,B110,B111,B113,B114,B117,B119,B120,B122,B124,B127,B128,B13,B131,B138,B139,B14,B16,B17,B18,B2,B23,B26,B28,B30,B34,B35,B36,B38,B39,B44,B46,B47,B48,B50,B55,B59,B6,B63,B64,B65,B69,B7,B70,B71,B72,B76,B78,B79,B8,B80,B84,B85,B86,B88,B9,B91,B94,B96,C10,C11,C13,C2,C23,C24,C27,C32,C33,C34,C36,C37,C39,C41,C42,C44,C50,C51,C54,C6,C60,C61,C62,C63,C64,C66,C68,C69,C70,C71,C72,C73,C76,C82,C84,D10,D2,D4,D5,D8
`Chr5:12698204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:12698519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B44,B84,B94,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765369.1

225 aa

112

225

EF-hand_7

EF-hand_1

EF-hand_5

EF-hand_6

EF-hand_8

EF-hand_7

EF-hand_5

PF13499 EF-hand_7 57-115 aa PF00036 EF-hand_1 58-85 aa PF13202 EF-hand_5 59-80 aa PF13405 EF-hand_6 59-85 aa PF13833 EF-hand_8 70-118 aa PF13499 EF-hand_7 147-211 aa PF13202 EF-hand_5 149-169 aa

XP_057765370.1

225 aa

112

225

EF-hand_7

EF-hand_1

EF-hand_5

EF-hand_6

EF-hand_8

EF-hand_7

EF-hand_5

XP_057765371.1

225 aa

112

225

EF-hand_7

EF-hand_1

EF-hand_5

EF-hand_6

EF-hand_8

EF-hand_7

EF-hand_5

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765369.1`	Pfam	`PF13499`	EF-hand_7	Domain	57	115	9.1e-17	61.9	EF-hand domain pair
`XP_057765369.1`	Pfam	`PF00036`	EF-hand_1	Domain	58	85	2.7e-17	61.7	EF hand domain
`XP_057765369.1`	Pfam	`PF13202`	EF-hand_5	Domain	59	80	1.6e-11	43.8	EF hand
`XP_057765369.1`	Pfam	`PF13405`	EF-hand_6	Domain	59	85	1.9e-16	58.9	EF-hand domain
`XP_057765369.1`	Pfam	`PF13833`	EF-hand_8	Domain	70	118	1.9e-08	34.6	EF-hand domain pair
`XP_057765369.1`	Pfam	`PF13499`	EF-hand_7	Domain	147	211	9.1e-17	61.9	EF-hand domain pair
`XP_057765369.1`	Pfam	`PF13202`	EF-hand_5	Domain	149	169	1.6e-11	43.8	EF hand
`XP_057765370.1`	Pfam	`PF13499`	EF-hand_7	Domain	57	115	9.1e-17	61.9	EF-hand domain pair
`XP_057765370.1`	Pfam	`PF00036`	EF-hand_1	Domain	58	85	2.7e-17	61.7	EF hand domain
`XP_057765370.1`	Pfam	`PF13202`	EF-hand_5	Domain	59	80	1.6e-11	43.8	EF hand
`XP_057765370.1`	Pfam	`PF13405`	EF-hand_6	Domain	59	85	1.9e-16	58.9	EF-hand domain
`XP_057765370.1`	Pfam	`PF13833`	EF-hand_8	Domain	70	118	1.9e-08	34.6	EF-hand domain pair
`XP_057765370.1`	Pfam	`PF13499`	EF-hand_7	Domain	147	211	9.1e-17	61.9	EF-hand domain pair
`XP_057765370.1`	Pfam	`PF13202`	EF-hand_5	Domain	149	169	1.6e-11	43.8	EF hand
`XP_057765371.1`	Pfam	`PF13499`	EF-hand_7	Domain	57	115	9.1e-17	61.9	EF-hand domain pair
`XP_057765371.1`	Pfam	`PF00036`	EF-hand_1	Domain	58	85	2.7e-17	61.7	EF hand domain
`XP_057765371.1`	Pfam	`PF13202`	EF-hand_5	Domain	59	80	1.6e-11	43.8	EF hand
`XP_057765371.1`	Pfam	`PF13405`	EF-hand_6	Domain	59	85	1.9e-16	58.9	EF-hand domain
`XP_057765371.1`	Pfam	`PF13833`	EF-hand_8	Domain	70	118	1.9e-08	34.6	EF-hand domain pair
`XP_057765371.1`	Pfam	`PF13499`	EF-hand_7	Domain	147	211	9.1e-17	61.9	EF-hand domain pair
`XP_057765371.1`	Pfam	`PF13202`	EF-hand_5	Domain	149	169	1.6e-11	43.8	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909387.1
ATTAAGATACACAAGTTAACAAAAGTTATTACTACTGACAAGGGTGAAATTCTTGAGTTGAAGTTGAAGGGCTCAAGACGACAAAGATGTGTCGACGAATTTAAGAAAGGTGTACAGAAATTGGTGGAATTCTTTCTTTTTTTTGTTAGTGCTGGCTGCTGAGGAGAGAAGCAGAGGCGATGAGGAAGCAGTGAGTGCAAATACAGTAGGTGGTGCTTCAGATTTACACGACCTTCTTCAACTGCTTACTTACTCGCGAT...

XM_057909386.1
ATTAAGATACACAAGTTAACAAAAGTTATTACTACTGACAAGGGTGAAATTCTTGAGTTGAAGTTGAAGGGCTCAAGACGACAAAGATGTGTCGACGAATTTAAGAAAGGTGTACAGAAATTGGTGGAATTCTTTCTTTTTTTTGTTAGTGCTGGCTGCTGAGGAGAGAAGCAGAGGCGATGAGGAAGCAGTGAGTGCAAATACACTTCAGATTTACACGACCTTCTTCAACTGCTTACTTACTCGCGATTACTGCTTCT...

CDS

3 records

下载 CDS FASTA

LOC130986101
ATGGGAGCTGCAATTACCAAAAGTTCGTCTCCCAAGTGTGGAGTGCCAGAATCTAAGCTTGAGGCCAAAATACTTGAGGCAATGCGTAGACGAGAAGCTCAAGGCAGTACTATCAAATCTTTCAACACCATCATTTTGAAGTTCCCCAAAATTGATCAAAGCTTAAGAAAATGCAAAGCTACATTCGAGAATTTTGATGAGGATGGAAATGGTGTAATAGATTCACAAGAGCTGAAGCACTGTTTTGAAAAGCTGGAGAT...

Protein

3 records

下载 Protein FASTA

XP_057765369.1
MGAAITKSSSPKCGVPESKLEAKILEAMRRREAQGSTIKSFNTIILKFPKIDQSLRKCKATFENFDEDGNGVIDSQELKHCFEKLEISFTDEEINDLFEACDIKEVKGIKFNEFIVLLCLVYFLKEDPAAQQDKSWKGMPNLEATFETLVDAFVFLDKNKDGYVSRNEMVDAINETTSGERSSGRIAMRRFEEMDWDKNGMVNFKEFLFAFTRWVGIEDADDNDN

XP_057765370.1
MGAAITKSSSPKCGVPESKLEAKILEAMRRREAQGSTIKSFNTIILKFPKIDQSLRKCKATFENFDEDGNGVIDSQELKHCFEKLEISFTDEEINDLFEACDIKEVKGIKFNEFIVLLCLVYFLKEDPAAQQDKSWKGMPNLEATFETLVDAFVFLDKNKDGYVSRNEMVDAINETTSGERSSGRIAMRRFEEMDWDKNGMVNFKEFLFAFTRWVGIEDADDNDN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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