Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001417`

染色体: Chr05 坐标: 12801274-12803894 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001417`
名称	SmilChr05G001417
描述	probable amino acid permease 7
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	12801274 - 12803894 / `-`

ID 对照

NCBI Gene ID	`LOC130986107`
GeneID	`130986107`
locus_tag	`-`
NCBI Name	`LOC130986107`
原始查询	`SmilChr05G001417`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable amino acid permease 7
产物	probable amino acid permease 7
Arabidopsis	`AT5G23810` (AAP7) amino acid permease 7 [Source:NCBI gene (formerly Entrezgene);Acc:832446] identity=56.3; qcov=1; evalue=1.77e-115; confidence=high
Rice	`Os04g0470700` (OsAAP7A) - identity=60.3; qcov=0.997; evalue=1.56e-139; confidence=high
GO	GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF01490 (Aa_trans); PF03222 (Trp_Tyr_perm)
InterPro	-
eggNOG	-
NR	GeneID:130986107

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057765377.1`
2	Vacuole	液泡	1.00000	`XP_057765378.1`
3	Vacuole membrane	液泡膜	1.00000	`XP_057765378.1`
4	Nucleus	细胞核	0.00000	`XP_057765379.1`
5	Chromosome	染色体	0.00000	`XP_057765379.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:12801342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B44,B84,B94,C70
`Chr5:12801642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr5:12801744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,C62
`Chr5:12802385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B44,B84,B94,C70
`Chr5:12802744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr5:12803357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,C70
`Chr5:12803715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr5:12803770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B29,B3,B59,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765377.1

484 aa

242

484

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 48-478 aa PF03222 Trp_Tyr_perm 52-212 aa

XP_057765378.1

368 aa

184

368

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 48-351 aa PF03222 Trp_Tyr_perm 52-209 aa

XP_057765379.1

366 aa

183

366

Aa_trans

PF01490 Aa_trans 9-360 aa

XP_057765380.1

301 aa

150

301

Aa_trans

PF01490 Aa_trans 1-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765377.1`	Pfam	`PF01490`	Aa_trans	Domain	48	478	2.9e-97	326.7	Transmembrane amino acid transporter protein
`XP_057765377.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	52	212	8.7e-07	29.1	Tryptophan/tyrosine permease family
`XP_057765378.1`	Pfam	`PF01490`	Aa_trans	Domain	48	351	5e-74	250.1	Transmembrane amino acid transporter protein
`XP_057765378.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	52	209	6.9e-07	29.4	Tryptophan/tyrosine permease family
`XP_057765379.1`	Pfam	`PF01490`	Aa_trans	Domain	9	360	1.8e-71	241.7	Transmembrane amino acid transporter protein
`XP_057765380.1`	Pfam	`PF01490`	Aa_trans	Domain	1	295	3.1e-63	214.6	Transmembrane amino acid transporter protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057909394.1
TTGTTGCCACGCGCCAAAAACAAAGAGCAGTGATGAAAAGGCCCGAATCGAGCGGCAATTTGTGTGATCTACCTCAGCTTCAATTCTAACAAACTTTTGTGAATCTGATCCGAAAACCATGGGAGCATCAGATGATAGGAATGAAGAGCCAATCCCATTATTGCAATTAGGACTGCCATCGCCGCTTCCTATGGCTGTGGATGACGACGACGACTTGTTCAAATCCGACGAAACAGTCAACTCTTCCGATCATAAAAGAA...

XM_057909395.1
CACGCGCCAAAAACAAAGAGCAGTGATGAAAAGGCCCGAATCGAGCGGCAATTTGTGTGATCTACCTCAGCTTCAATTCTAACAAACTTTTGTGAATCTGATCCGAAAACCATGGGAGCATCAGATGATAGGAATGAAGAGCCAATCCCATTATTGCAATTAGGACTGCCATCGCCGCTTCCTATGGCTGTGGATGACGACGACGACTTGTTCAAATCCGACGAAACAGTCAACTCTTCCGATCATAAAAGAACTGGGAA...

CDS

4 records

下载 CDS FASTA

LOC130986107
ATGGGAGCATCAGATGATAGGAATGAAGAGCCAATCCCATTATTGCAATTAGGACTGCCATCGCCGCTTCCTATGGCTGTGGATGACGACGACGACTTGTTCAAATCCGACGAAACAGTCAACTCTTCCGATCATAAAAGAACTGGGAATACATGGACCGCGTCGGCGCATATCATAACGGGAGTGATAGGGTCCGGCGTGCTGTCGCTGGCATGGAGCATGGCGCAGTTGGGCTGGATCTGGGGCCCTCTTTTGATGCT...

LOC130986107
ATGAATGGTAGGAGTCTATGCATTACAGGGAAGAAGAATGCTTGGATATGTGGACTGCTTATACAGATGAATCTCTACGGAACAGGAGTTGCGTATACTATTACTACTGCTCTCTGCTTGAGAGCAATAGAGAGATCAAAGTGTGACAAGGAGAATGGATCTGGTGCTTCATGTGATTCAGGAAATGGATGGTACATGCTGTTATTTGGAGTAGTTCAAATCTTCATGTCACAGATTCCTGATTTCCATAGCATGGTGTG...

Protein

4 records

下载 Protein FASTA

XP_057765377.1
MGASDDRNEEPIPLLQLGLPSPLPMAVDDDDDLFKSDETVNSSDHKRTGNTWTASAHIITGVIGSGVLSLAWSMAQLGWIWGPLLMLLFAAVTLLSSFLICNCYRSPDPDYGPTRNRSYVAAVQCNLGKKNAWICGLLIQMNLYGTGVAYTITTALCLRAIERSKCDKENGSGASCDSGNGWYMLLFGVVQIFMSQIPDFHSMVWVSIAAAIMSFAYSSIALGLGAAKVVGNRAIQGSLVGVSTSTAMQKVWRVSQAVGD...

XP_057765378.1
MGASDDRNEEPIPLLQLGLPSPLPMAVDDDDDLFKSDETVNSSDHKRTGNTWTASAHIITGVIGSGVLSLAWSMAQLGWIWGPLLMLLFAAVTLLSSFLICNCYRSPDPDYGPTRNRSYVAAVQCNLGKKNAWICGLLIQMNLYGTGVAYTITTALCLRAIERSKCDKENGSGASCDSGNGWYMLLFGVVQIFMSQIPDFHSMVWVSIAAAIMSFAYSSIALGLGAAKVVGNRAIQGSLVGVSTSTAMQKVWRVSQAVGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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