Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001419`

染色体: Chr05 坐标: 12829427-12834044 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001419`
名称	SmilChr05G001419
描述	probable galactinol--sucrose galactosyltransferase 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	12829427 - 12834044 / `-`

ID 对照

NCBI Gene ID	`LOC130986109`
GeneID	`130986109`
locus_tag	`-`
NCBI Name	`LOC130986109`
原始查询	`SmilChr05G001419`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable galactinol--sucrose galactosyltransferase 1
产物	probable galactinol--sucrose galactosyltransferase 1
Arabidopsis	`AT1G55740` (SIP1) seed imbibition 1 [Source:NCBI gene (formerly Entrezgene);Acc:842023] identity=61.9; qcov=1; evalue=0; confidence=high
Rice	`Os08g0495800` (Osh69) - identity=63.7; qcov=0.999; evalue=0; confidence=high
GO	-
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05691 (Raffinose_syn)
InterPro	-
eggNOG	-
NR	GeneID:130986109

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057765382.1`
2	Cytoplasm	细胞质	0.80000	`XP_057765382.1`
3	Nucleus	细胞核	0.00000	`XP_057765382.1`
4	Chromosome	染色体	0.00000	`XP_057765382.1`
5	Centromere	着丝粒	0.00000	`XP_057765382.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:12829587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B131,C42,D10
`Chr5:12829628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B44,B84,B94,C70
`Chr5:12829692`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:12829720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:12829764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:12829807`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B136
`Chr5:12829807`	`AT`	`A`	1bp_deletion	CDS_variant	1	B136
`Chr5:12830851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B29,B3,B59,C38,C61
`Chr5:12830907`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C14
`Chr5:12830907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr5:12831564`	`TC`	`T`	1bp_deletion	frameshift_variant	4	A11,B33,B68,C48
`Chr5:12831564`	`TC`	`T`	1bp_deletion	CDS_variant	4	A11,B33,B68,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765382.1

792 aa

396

792

Raffinose_syn

PF05691 Raffinose_syn 56-775 aa

XP_057765383.1

797 aa

398

797

Raffinose_syn

PF05691 Raffinose_syn 56-780 aa

XP_057765384.1

698 aa

349

698

Raffinose_syn

PF05691 Raffinose_syn 7-681 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765382.1`	Pfam	`PF05691`	Raffinose_syn	Family	56	775	8.7e-287	953.6	Raffinose synthase or seed imbibition protein Sip1
`XP_057765383.1`	Pfam	`PF05691`	Raffinose_syn	Family	56	780	1.4e-283	943.0	Raffinose synthase or seed imbibition protein Sip1
`XP_057765384.1`	Pfam	`PF05691`	Raffinose_syn	Family	7	681	1.4e-275	916.5	Raffinose synthase or seed imbibition protein Sip1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909399.1
CTTTCCTTTTGGTGTATGATTTTTTTTTTTTTGACAAACTGCCAAAATCCATCACACTCTTGCTCTAGGCGCCATAGAAATACGTTCCGTTTATCCCATTGCACAAATCGCAATCCTCCTTCCCAATTGCGAAATCAAATTCTCTGCTTCACCGCTATAATATTAATGGCAGGCTTATCTCTTGCTGACGGAAAGCTGAGCGTCAGCGGATATTGCATTCTCAGCGACGTTGCTGAAAATATTTTCCTAACTCCCGCAGA...

XM_057909400.1
CTTTTGGTGTATGATTTTTTTTTTTTTGACAAACTGCCAAAATCCATCACACTCTTGCTCTAGGCGCCATAGAAATACGTTCCGTTTATCCCATTGCACAAATCGCAATCCTCCTTCCCAATTGCGAAATCAAATTCTCTGCTTCACCGCTATAATATTAATGGCAGGCTTATCTCTTGCTGACGGAAAGCTGAGCGTCAGCGGATATTGCATTCTCAGCGACGTTGCTGAAAATATTTTCCTAACTCCCGCAGAAAATG...

CDS

3 records

下载 CDS FASTA

LOC130986109
ATGATTTTTTTTTTTTTGACAAACTGCCAAAATCCATCACACTCTTGCTCTAGGCGCCATAGAAATACGTTCCGTTTATCCCATTGCACAAATCGCAATCCTCCTTCCCAATTGCGAAATCAAATTCTCTGCTTCACCGCTATAATATTAATGGCAGGCTTATCTCTTGCTGACGGAAAGCTGAGCGTCAGCGGATATTGCATTCTCAGCGACGTTGCTGAAAATATTTTCCTAACTCCCGCAGAAAATGAGCAGACCAC...

Protein

3 records

下载 Protein FASTA

XP_057765382.1
MIFFFLTNCQNPSHSCSRRHRNTFRLSHCTNRNPPSQLRNQILCFTAIILMAGLSLADGKLSVSGYCILSDVAENIFLTPAENEQTTFLGVNSEHRGSRLVFPVGKIKGLRILCLYRFKLWWMTQWMGTRGQDIPCETQFLLVELPQEQSNSVYYAVFLPIIEGDFRAVLQGNAHDELEICLESGDPSVRQFEGRHLVYVAAGTDPYSVIENSVKSLQTKLQTFRHRSEKEMPDFLNWFGWCTWDAFYTDVTAEGVKEGI...

XP_057765383.1
MIFFFLTNCQNPSHSCSRRHRNTFRLSHCTNRNPPSQLRNQILCFTAIILMAGLSLADGKLSVSGYCILSDVAENIFLTPAENEQTTFLGVNSEHRGSRLVFPVGKIKGLRILCLYRFKLWWMTQWMGTRGQDIPCETQFLLVELPQEQSNSVYYAVFLPIIEGDFRAVLQGNAHDELEICLESELPFAGDPSVRQFEGRHLVYVAAGTDPYSVIENSVKSLQTKLQTFRHRSEKEMPDFLNWFGWCTWDAFYTDVTAEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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