当前解析结果
SmilChr05G001426| 统一新 Gene ID | SmilChr05G001426 |
|---|---|
| 名称 | SmilChr05G001426 |
| 描述 | heavy metal-associated isoprenylated plant protein 47-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 12965545 - 12966240 / - |
| NCBI Gene ID | LOC130986117 |
|---|---|
| GeneID | 130986117 |
| locus_tag | - |
| NCBI Name | LOC130986117 |
| 原始查询 | SmilChr05G001426 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 47-like |
| 产物 | heavy metal-associated isoprenylated plant protein 47-like |
| Arabidopsis | AT3G20180 (AT3G20180)Copper transport protein family [Source:NCBI gene (formerly Entrezgene);Acc:821562] identity=36.9; qcov=1.08; evalue=4.89e-16; confidence=low |
| Rice | Os04g0464100- identity=47.2; qcov=0.788; evalue=5.09e-16; confidence=low |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986117 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057765391.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057765391.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057765391.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765391.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765391.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:12965685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr5:12965733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr5:12966118 |
C |
CAT |
2bp_insertion | frameshift_variant | 119 | A1,A11,A14,A15,A22,A23,A25,A3,A4,A8,A9,B10,B100,B104,B105,B108,B112,B113,B115,B119,B120,B121,B123,B128,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B16,B17,B20,B25,B26,B27,B28,B30,B35,B36,B4,B44,B45,B48,B49,B5,B52,B54,B55,B57,B58,B69,B70,B71,B72,B76,B80,B81,B83,B84,B85,B86,B87,B88,B94,C1,C10,C12,C14,C15,C16,C17,C2,C20,C22,C23,C24,C26,C27,C29,C30,C32,C34,C36,C38,C42,C45,C47,C5,C50,C52,C53,C54,C61,C63,C64,C66,C67,C7,C70,C71,C72,C73,C76,C80,C82,C84,C85,C86,C87,D10,D11,D3,D4,D6 |
Chr5:12966119 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | A11,B33,B68,C48 |
Chr5:12966119 |
AT |
A |
1bp_deletion | CDS_variant | 4 | A11,B33,B68,C48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。