当前解析结果
SmilChr05G001432| 统一新 Gene ID | SmilChr05G001432 |
|---|---|
| 名称 | SmilChr05G001432 |
| 描述 | disease resistance protein RPM1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13064935 - 13068038 / - |
| NCBI Gene ID | LOC130986124 |
|---|---|
| GeneID | 130986124 |
| locus_tag | - |
| NCBI Name | LOC130986124 |
| 原始查询 | SmilChr05G001432 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPM1-like |
| 产物 | disease resistance protein RPM1-like |
| Arabidopsis | AT3G07040 (RPM1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:819889] identity=29.5; qcov=0.998; evalue=3.2e-123; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=32.9; qcov=0.931; evalue=2.21e-135; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986124 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765393.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765393.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765393.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765393.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765393.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13065084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr5:13065106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13065166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:13065194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13065206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B18,C2 |
Chr5:13065440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:13065469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B3,B55,B59,C38 |
Chr5:13065533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C80 |
Chr5:13065550 |
T |
TAA |
2bp_insertion | frameshift_variant | 4 | A11,B33,B68,C48 |
Chr5:13065550 |
T |
TAA |
2bp_insertion | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13065551 |
TTC |
T |
2bp_deletion | frameshift_variant | 4 | A11,B33,B68,C48 |
Chr5:13065551 |
TTC |
T |
2bp_deletion | CDS_variant | 4 | A11,B33,B68,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765393.1PF18052
Rx_N 12-85 aa
PF00931
NB-ARC 168-334 aa
PF23559
WHD_DRP 420-490 aa
PF23598
LRR_14 539-864 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765393.1 |
Pfam | PF18052 |
Rx_N | Domain | 12 | 85 | 1.6e-11 | 44.8 | Rx N-terminal domain |
XP_057765393.1 |
Pfam | PF00931 |
NB-ARC | Domain | 168 | 334 | 1.1e-35 | 123.4 | NB-ARC domain |
XP_057765393.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 420 | 490 | 1.9e-16 | 60.6 | Disease resistance protein Winged helix domain |
XP_057765393.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 539 | 864 | 7.3e-43 | 147.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。