Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001441`

染色体: Chr05 坐标: 13158898-13160767 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001441`
名称	SmilChr05G001441
描述	uncharacterized protein At4g26485-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13158898 - 13160767 / `-`

ID 对照

NCBI Gene ID	`LOC130986132`
GeneID	`130986132`
locus_tag	`-`
NCBI Name	`LOC130986132`
原始查询	`SmilChr05G001441`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	methyltransferase small domain protein [Source:NCBI gene (formerly Entrezgene);Acc:10723141]; symbol=AT4G26485; hit=AT4G26485; species=arabidopsis; confidence=high
产物	methyltransferase small domain protein [Source:NCBI gene (formerly Entrezgene);Acc:10723141]; symbol=AT4G26485; hit=AT4G26485; species=arabidopsis; confidence=high
Arabidopsis	`AT4G26485` (AT4G26485) methyltransferase small domain protein [Source:NCBI gene (formerly Entrezgene);Acc:10723141] identity=46.8; qcov=0.788; evalue=3.51e-53; confidence=high
Rice	`Os09g0479400` - identity=40.8; qcov=0.835; evalue=8.37e-46; confidence=medium
GO	GO:0005737 (cytoplasm); GO:0070042 (rRNA (uridine-N3-)-methyltransferase activity); GO:0070475 (rRNA base methylation)
KEGG	-
Pfam	PF10354 (BMT5-like)
InterPro	-
eggNOG	-
NR	GeneID:130986132

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765400.1`
2	Cytoplasm	细胞质	0.60000	`XP_057765400.1`
3	Cytosol	细胞质基质	0.20000	`XP_057765400.1`
4	Chromosome	染色体	0.00000	`XP_057765400.1`
5	Centromere	着丝粒	0.00000	`XP_057765400.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13159076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:13159141`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C26
`Chr5:13159141`	`TC`	`T`	1bp_deletion	CDS_variant	1	C26
`Chr5:13159193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13159381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:13159447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:13159903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765400.1

255 aa

128

255

BMT5-like

PF10354 BMT5-like 67-231 aa

XP_057765401.1

255 aa

128

255

BMT5-like

PF10354 BMT5-like 67-231 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765400.1`	Pfam	`PF10354`	BMT5-like	Domain	67	231	3.1e-48	165.0	rRNA (uridine-N3-)-methyltransferase BTM5-like
`XP_057765401.1`	Pfam	`PF10354`	BMT5-like	Domain	67	231	3.1e-48	165.0	rRNA (uridine-N3-)-methyltransferase BTM5-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909417.1
TTCCGTACATAAAGCTCAAAATAATGATTCCGCTTTCCTCTCTTCCATCTTCTCTAAACAAAAGACTCCTTCGCCATTGACTCCACTTTTATTTCACACTCTACTTCACATCATCTTCTTCATCTTACATGGACTATTAAGTAAAGCTTCACATATTCCCATTAATCACTCTGGAGGAGCATACGATCTGCGAGCTATTTTATCTCCATCCATCCTTAATTCCTTTGTTTTGGAGTTTAATTTTAAATCCGTTTGGGAAT...

XM_057909418.1
CATCTTCTCTAAACAAAAGACTCCTTCGCCATTGACTCCACTTTTATTTCACACTCTACTTCACATCATCTTCTTCATCTTACATGGACTATTAAGTAAAGCTTCACATATTCCCATTAATCACTCTGGAGGAGCATACGATCTGCGAGCTATTTTATCTCCATCCATCCTTAATTCCTTTGTTTTGGAGTTTAATTTTTGTATTTCTTATGTAGAAATCCGTTTGGGAATGGGAATCCAGCAGAGTGTTATGCAGACTT...

CDS

2 records

下载 CDS FASTA

LOC130986132
ATGGGAATCCAGCAGAGTGTTATGCAGACTTCCGCCATTGAAACAGATGAGGAGGAAGAAAATGCTAATTCCTCACTAAATTGGTATAACTCAAACTCTGGTGAGAAATCGGAGTACAACTCTCTTGGTTCCCTTGATCCATGGCAGAAGGAAAGAGAGGGTAGATGGATGAAGCATTACAGTAGCTGCCACCGGATTCTGCTGGTTGGGGAGGGGGATTTCTCCTTCTCCACTTGTTTGGCGTCGGCTTTTGGTTGGGC...

Protein

2 records

下载 Protein FASTA

XP_057765400.1
MGIQQSVMQTSAIETDEEEENANSSLNWYNSNSGEKSEYNSLGSLDPWQKEREGRWMKHYSSCHRILLVGEGDFSFSTCLASAFGWASNMVATSFDSQAFLVKNYRNALSNLVELRMRKCRVMLEIDATKMATHQLLSGMKFDRIVFNFPFAGFFKGLPREAQIRLHRRLVSGFLENTKEMLSENGEIHITHKSNGFHGEWKLELVAFVHGLRLVEAVDFDKVEWPGYNTKYGFGGDHNFDCNPSITYKFRPFHI

XP_057765401.1
MGIQQSVMQTSAIETDEEEENANSSLNWYNSNSGEKSEYNSLGSLDPWQKEREGRWMKHYSSCHRILLVGEGDFSFSTCLASAFGWASNMVATSFDSQAFLVKNYRNALSNLVELRMRKCRVMLEIDATKMATHQLLSGMKFDRIVFNFPFAGFFKGLPREAQIRLHRRLVSGFLENTKEMLSENGEIHITHKSNGFHGEWKLELVAFVHGLRLVEAVDFDKVEWPGYNTKYGFGGDHNFDCNPSITYKFRPFHI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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