当前解析结果
SmilChr05G001449| 统一新 Gene ID | SmilChr05G001449 |
|---|---|
| 名称 | SmilChr05G001449 |
| 描述 | kinesin-like protein KIN-14F |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13229674 - 13239752 / + |
| NCBI Gene ID | LOC130986141 |
|---|---|
| GeneID | 130986141 |
| locus_tag | - |
| NCBI Name | LOC130986141 |
| 原始查询 | SmilChr05G001449 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-14F |
| 产物 | kinesin-like protein KIN-14F |
| Arabidopsis | AT3G44730 (KP1)kinesin-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:823602] identity=58.1; qcov=1.04; evalue=0; confidence=high |
| Rice | Os04g0467901 (OsKCH2)- identity=50.2; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF00307 (CH); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986141 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057765408.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057765408.1 |
| 3 | Spindle | Spindle | 1.00000 | XP_057765408.1 |
| 4 | Spindle pole | Spindle pole | 0.80000 | XP_057765408.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057765408.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13230267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B4,B44,B84,B94 |
Chr5:13232404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr5:13233559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr5:13233618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:13233626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr5:13234660 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | B19 |
Chr5:13234660 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | B19 |
Chr5:13234941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13235758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13235985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13236058 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,B74,C35 |
Chr5:13236070 |
AAT |
A |
2bp_deletion | frameshift_variant | 2 | B112,B126 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765408.1PF00307
CH 51-170 aa
PF16796
Microtub_bd 415-575 aa
PF00225
Kinesin 435-757 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765408.1 |
Pfam | PF00307 |
CH | Domain | 51 | 170 | 1.5e-09 | 38.7 | Calponin homology (CH) domain |
XP_057765408.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 415 | 575 | 1.7e-40 | 139.2 | Microtubule binding |
XP_057765408.1 |
Pfam | PF00225 |
Kinesin | Domain | 435 | 757 | 6.7e-106 | 354.7 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。