Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001449

染色体: Chr05 坐标: 13229674-13239752 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001449
名称SmilChr05G001449
描述kinesin-like protein KIN-14F
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向13229674 - 13239752 / +

ID 对照

NCBI Gene IDLOC130986141
GeneID130986141
locus_tag-
NCBI NameLOC130986141
原始查询SmilChr05G001449

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-14F
产物kinesin-like protein KIN-14F
ArabidopsisAT3G44730 (KP1)
kinesin-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:823602]
identity=58.1; qcov=1.04; evalue=0; confidence=high
RiceOs04g0467901 (OsKCH2)
-
identity=50.2; qcov=0.98; evalue=0; confidence=high
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGG-
PfamPF00225 (Kinesin); PF00307 (CH); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:130986141

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057765408.1
2 Phragmoplast Phragmoplast 1.00000 XP_057765408.1
3 Spindle Spindle 1.00000 XP_057765408.1
4 Spindle pole Spindle pole 0.80000 XP_057765408.1
5 Chromosome 染色体 0.20000 XP_057765408.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:13230267 C T EMS_canonical_SNV CDS_variant 4 B4,B44,B84,B94
Chr5:13232404 C T EMS_canonical_SNV CDS_variant 2 C32,C68
Chr5:13233559 G A EMS_canonical_SNV CDS_variant 1 C31
Chr5:13233618 C T EMS_canonical_SNV CDS_variant 1 B55
Chr5:13233626 G A EMS_canonical_SNV CDS_variant 1 C46
Chr5:13234660 C CAT 2bp_insertion frameshift_variant 1 B19
Chr5:13234660 C CAT 2bp_insertion CDS_variant 1 B19
Chr5:13234941 C T EMS_canonical_SNV CDS_variant 4 A11,B33,B68,C48
Chr5:13235758 C T EMS_canonical_SNV CDS_variant 4 A11,B33,B68,C48
Chr5:13235985 G A EMS_canonical_SNV CDS_variant 4 A11,B33,B68,C48
Chr5:13236058 G A EMS_canonical_SNV CDS_variant 3 B14,B74,C35
Chr5:13236070 AAT A 2bp_deletion frameshift_variant 2 B112,B126

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765408.1
1110 aa
N
1
555
1110
CH
Microtub_bd
Kinesin
C
PF00307 CH 51-170 aa PF16796 Microtub_bd 415-575 aa PF00225 Kinesin 435-757 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765408.1 Pfam PF00307 CH Domain 51 170 1.5e-09 38.7 Calponin homology (CH) domain
XP_057765408.1 Pfam PF16796 Microtub_bd Domain 415 575 1.7e-40 139.2 Microtubule binding
XP_057765408.1 Pfam PF00225 Kinesin Domain 435 757 6.7e-106 354.7 Kinesin motor domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057909425.1
AAATCAAGCTGCCTCGCTTACTTTTTTCCGAACTTCCTCATTTTCAGTCCACTGCATTAAATGAAATGAATCCCCCCGCTGATTCTTTGAATGCTTCATCATAATTCACGAGAACTCCATTCAATTTCTCCATTCCCACACTTTAACAATCACATCCATTCTAATGATCTTATCCTCCCATTTTCTCGGAATTCCAACTACCTCGTCGCCGGCAACCAGTAAATAAATTGGGGTGAGGAGGAGACGGCCATCAAAATGCC...

CDS

1 records

下载 CDS FASTA
LOC130986141
ATGCCACAAGAAAGCTACAACAATTCCATATTCAACTCCCCCAGTAAGAACTTGAGAGGACTAAAGGGATTGATCTACAACACCGCCAACGCCGATGAAATCATCAGCGATCGCGAATTAGCCCAGAGAAAAGCCGAAGAAGCAGCATCAAGGAGGTACCAGGCGGCGCAATGGCTGCAGCAGATGGATCAGGGCGGGTCGGAGGTCCTCCCCAGAGAACCGACGGAGGAGGAATTCTGTTTGGCGCTTCGCAACGGACT...

Protein

1 records

下载 Protein FASTA
XP_057765408.1
MPQESYNNSIFNSPSKNLRGLKGLIYNTANADEIISDRELAQRKAEEAASRRYQAAQWLQQMDQGGSEVLPREPTEEEFCLALRNGLILCNVLNKVNPGAVHKVVENPVLDVQATEGAAQSAIQYFENMRNFLAAVGKMKLLTFGASDLEKGGSSGKVVDCILCLKGYYEWKKSGGIGVWKYGGTVRITSLVKESPSSAVSSESADESIDDSESSQYEQLMEFLHLSTDSHEDSRVANILTFMFDHCSLGLLQSYLTETN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器