当前解析结果
SmilChr05G001451| 统一新 Gene ID | SmilChr05G001451 |
|---|---|
| 名称 | SmilChr05G001451 |
| 描述 | protein FAR1-RELATED SEQUENCE 1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13252643 - 13257487 / - |
| NCBI Gene ID | LOC131025534 |
|---|---|
| GeneID | 131025534 |
| locus_tag | - |
| NCBI Name | LOC131025534 |
| 原始查询 | SmilChr05G001451 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 1-like |
| 产物 | protein FAR1-RELATED SEQUENCE 1-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=31.9; qcov=0.439; evalue=9.17e-14; confidence=low |
| Rice | Os03g0655600- identity=32.7; qcov=0.406; evalue=5.19e-14; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025534 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811310.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811310.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811310.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811310.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811310.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13252658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C21 |
Chr5:13252730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr5:13252821 |
AAG |
A |
2bp_deletion | frameshift_variant | 3 | B132,B22,C70 |
Chr5:13252821 |
AAG |
A |
2bp_deletion | CDS_variant | 3 | B132,B22,C70 |
Chr5:13256909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B38,B39 |
Chr5:13256915 |
AG |
A |
1bp_deletion | frameshift_variant | 14 | A5,B22,B48,B49,B58,B66,B89,B99,C18,C44,C53,C60,C87,D7 |
Chr5:13256917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr5:13256950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B117,B67,C4 |
Chr5:13256977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C43 |
Chr5:13256985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B36,D5 |
Chr5:13257004 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B109,C79 |
Chr5:13257004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C79 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。