Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001457`

染色体: Chr05 坐标: 13298790-13303856 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001457`
名称	SmilChr05G001457
描述	uncharacterized SmilChr05G001457
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13298790 - 13303856 / `+`

ID 对照

NCBI Gene ID	`LOC130986147`
GeneID	`130986147`
locus_tag	`-`
NCBI Name	`LOC130986147`
原始查询	`SmilChr05G001457`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GBF-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:820513]; symbol=GIP1; hit=AT3G13222; species=arabidopsis; confidence=weak
产物	GBF-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:820513]; symbol=GIP1; hit=AT3G13222; species=arabidopsis; confidence=weak
Arabidopsis	`AT3G13222` (GIP1) GBF-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:820513] identity=51; qcov=0.198; evalue=4.95e-21; confidence=weak
Rice	`Os06g0206100` - identity=61.3; qcov=0.121; evalue=5.53e-19; confidence=weak
GO	GO:0005634 (nucleus); GO:0051082 (GO:0051082)
KEGG	-
Pfam	PF06972 (GIP1_N)
InterPro	-
eggNOG	-
NR	GeneID:130986147

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057765421.1`
2	Cytosol	细胞质基质	0.80000	`XP_057765422.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057765421.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057765422.1`
5	Nucleus	细胞核	0.00000	`XP_057765421.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13299135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:13299172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C71
`Chr5:13300330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B33,C48
`Chr5:13300356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,A2
`Chr5:13300358`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B135
`Chr5:13300358`	`AT`	`A`	1bp_deletion	CDS_variant	1	B135
`Chr5:13301109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13301520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B11,B135,C64,C66
`Chr5:13301521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13301557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B23,B57,C24
`Chr5:13301558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B49,B55,C32,C68,D4
`Chr5:13301683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B23,B57,C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765421.1

517 aa

258

517

GIP1_N

PF06972 GIP1_N 9-67 aa

XP_057765422.1

514 aa

257

514

GIP1_N

PF06972 GIP1_N 9-67 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765421.1`	Pfam	`PF06972`	GIP1_N	Domain	9	67	7.3e-32	110.1	GBF-interacting protein 1 N-terminal
`XP_057765422.1`	Pfam	`PF06972`	GIP1_N	Domain	9	67	7.3e-32	110.1	GBF-interacting protein 1 N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909438.1
AATCCCAGAAAAAGGGGGAAATTAAAAAAACGAAAAATTTGCATTGGAAGGTTGAGCCAGCCAGGGGAGGTCGCCTTATACGCCAAGCAAACACACCACAATCTCCGTTCACCGTTCATATAATCTCCTGCAACTCCCCATCTCCCTGCATGCATTACGCTTCTCATCTATTTTTACGATAGATGAATATCATTTTGATTGATTGTTAATTATTTGTCAAAATCAACACGATGAGCGGGTTTTCTAGGGTTTCGATTTCC...

XM_057909439.1
AATCCCAGAAAAAGGGGGAAATTAAAAAAACGAAAAATTTGCATTGGAAGGTTGAGCCAGCCAGGGGAGGTCGCCTTATACGCCAAGCAAACACACCACAATCTCCGTTCACCGTTCATATAATCTCCTGCAACTCCCCATCTCCCTGCATGCATTACGCTTCTCATCTATTTTTACGATAGATGAATATCATTTTGATTGATTGTTAATTATTTGTCAAAATCAACACGATGAGCGGGTTTTCTAGGGTTTCGATTTCC...

CDS

2 records

下载 CDS FASTA

LOC130986147
ATGAGCGGGTTTTCTAGGGTTTCGATTTCCGACAGTTTGCGAAGGACGATTGAGGATATCAAGGAGATTGCCGGCCAACACAGCGATGAAGATATTTACGCAATGCTGAAGGAGTGCAACATGGATCCCAATGAAACCGCTCAGAAACTCCTCTATCTCGATACGTTTCATGAGGTTAAGAGGAAACGTGATCGGCGGAAAGTGCGGCGAGGGACTAGGGGTGGTGGAAACAATTATTCTTCGTATAATTCTGCTGATGT...

Protein

2 records

下载 Protein FASTA

XP_057765421.1
MSGFSRVSISDSLRRTIEDIKEIAGQHSDEDIYAMLKECNMDPNETAQKLLYLDTFHEVKRKRDRRKVRRGTRGGGNNYSSYNSADVVGGRQLNVRQEISHSSPMAMGRDSNKSSVAVVHQESSKAPAITGSTSAANGSTIVYNGSPIHELNSQLAEQNIRGAAKETQTVCDGMSKKLPSLRTVSLKQFANIDPGPTPTSTPTNASAAATARTPGGSLRPKCSHVGNSVGLYSSATDPVLVPSLNPRNPGSVGIIKRETG...

XP_057765422.1
MSGFSRVSISDSLRRTIEDIKEIAGQHSDEDIYAMLKECNMDPNETAQKLLYLDTFHEVKRKRDRRKVRRGTRGGGNNYSSYNSAGGRQLNVRQEISHSSPMAMGRDSNKSSVAVVHQESSKAPAITGSTSAANGSTIVYNGSPIHELNSQLAEQNIRGAAKETQTVCDGMSKKLPSLRTVSLKQFANIDPGPTPTSTPTNASAAATARTPGGSLRPKCSHVGNSVGLYSSATDPVLVPSLNPRNPGSVGIIKRETGNQR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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