Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001461`

染色体: Chr05 坐标: 13335630-13340101 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001461`
名称	SmilChr05G001461
描述	uncharacterized SmilChr05G001461
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13335630 - 13340101 / `+`

ID 对照

NCBI Gene ID	`LOC130986150`
GeneID	`130986150`
locus_tag	`-`
NCBI Name	`LOC130986150`
原始查询	`SmilChr05G001461`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841728]; symbol=AT1G52950; hit=AT1G52950; species=arabidopsis; confidence=weak
产物	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841728]; symbol=AT1G52950; hit=AT1G52950; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G52950` (AT1G52950) Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841728] identity=23.2; qcov=0.701; evalue=2.02e-08; confidence=weak
Rice	`Os02g0776800` (RPA1A) - identity=24; qcov=0.665; evalue=2.94e-08; confidence=weak
GO	-
KEGG	-
Pfam	PF02721 (DUF223); PF08646 (Rep_fac-A_C); PF16900 (REPA_OB_2)
InterPro	-
eggNOG	-
NR	GeneID:130986150

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765426.1`
2	Chromosome	染色体	0.00000	`XP_057765426.1`
3	Centromere	着丝粒	0.00000	`XP_057765426.1`
4	Chromatin	染色质	0.00000	`XP_057765426.1`
5	Telomere	端粒	0.00000	`XP_057765426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13337615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,C77
`Chr5:13337699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr5:13337728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:13337730`	`A`	`AG`	1bp_insertion	frameshift_variant	5	B138,B33,B98,B99,C14
`Chr5:13337730`	`A`	`AG`	1bp_insertion	CDS_variant	5	B138,B33,B98,B99,C14
`Chr5:13337735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr5:13337776`	`TTG`	`T`	2bp_deletion	frameshift_variant	9	B121,B35,B46,B55,B62,B67,B81,B91,C23
`Chr5:13337967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B32,B6,C63
`Chr5:13338011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B138,B33,B98,B99,C14
`Chr5:13338138`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A6
`Chr5:13338138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr5:13338147`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765426.1

472 aa

236

472

DUF223

REPA_OB_2

Rep_fac-A_C

PF02721 DUF223 1-88 aa PF16900 REPA_OB_2 86-179 aa PF08646 Rep_fac-A_C 252-379 aa

XP_057765427.1

388 aa

194

388

Rep_fac-A_C

PF08646 Rep_fac-A_C 168-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765426.1`	Pfam	`PF02721`	DUF223	Domain	1	88	4.5e-10	40.4	Domain of unknown function DUF223
`XP_057765426.1`	Pfam	`PF16900`	REPA_OB_2	Domain	86	179	6.7e-07	29.9	Replication protein A OB domain
`XP_057765426.1`	Pfam	`PF08646`	Rep_fac-A_C	Domain	252	379	9.8e-14	52.1	Replication factor-A C terminal domain
`XP_057765427.1`	Pfam	`PF08646`	Rep_fac-A_C	Domain	168	295	1.5e-13	51.5	Replication factor-A C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909443.1
AATTCCTCTTCACACACGTCTTCACACACAAATGATTTCACCCTCACATTCACCAATCCTGCGCTCTTAATCCTCCACCAGATTTCCACCAACTGCACTCGGATTCCAGTCGCCACCGCCGCCTTCACCGCGCCGGCCACCTCCCTTCCCCCGCAAGCCCTCCGATCTGCATCGCCGCCTCTTTCTTTCTTCAATCGGCGGCTCCACCCCCCACCGCTATCTCCGCCGCACATTCACCAATCCTGCGCTCTTAATCCTCC...

XM_057909444.1
TTTTTGAAAACTTTCAAGCTATCAAAAATAATCCAAGCTTTCAATATGCCAAAATCAATCATCAATGTAGGATCGGCTTTGATCTTGCTACTAATGTGTCGGAACCTAAGGAGTTTGTGGAAATTGTGAAATATGGATTCCAATTTGTACCTTTCAAGGAAATACAATCGCATGATAGCATGTTTGTTTTGGAACGACACAATTACAATAGAATGGGCGGACTTCAAAGGTAGAAAAGCCAGCAAATGTGACGTCACATT...

CDS

2 records

下载 CDS FASTA

LOC130986150
ATGATTGTAGTGGATGAAATGGGTGACAAAATTCAAGCTACAATCTCTACGGGGTTGAAAAACAAGTTTTTTGATCTACTAAAAGAGGGCCAAATTTATGTTTTTGAAAACTTTCAAGCTATCAAAAATAATCCAAGCTTTCAATATGCCAAAATCAATCATCAATGTAGGATCGGCTTTGATCTTGCTACTAATGTGTCGGAACCTAAGGAGTTTGTGGAAATTGTGAAATATGGATTCCAATTTGTACCTTTCAAGGA...

LOC130986150
ATGGATTCCAATTTGTACCTTTCAAGGAAATACAATCGCATGATAGCATGTTTGTTTTGGAACGACACAATTACAATAGAATGGGCGGACTTCAAAGGTAGAAAAGCCAGCAAATGTGACGTCACATTGGAAGATGCATATGGAACACAAGTAACTTGTGTGTTGTGGGAGTCTTTTGCTGATGAACTAAAGTCTTTTATGGAGTCCAAGAAAAATGAAGACAAAGAGCCCGTTCTCGTGGCTTTGCAATTTGCGAAGAT...

Protein

2 records

下载 Protein FASTA

XP_057765426.1
MIVVDEMGDKIQATISTGLKNKFFDLLKEGQIYVFENFQAIKNNPSFQYAKINHQCRIGFDLATNVSEPKEFVEIVKYGFQFVPFKEIQSHDSMFVLDILGEVKNDTITIEWADFKGRKASKCDVTLEDAYGTQVTCVLWESFADELKSFMESKKNEDKEPVLVALQFAKISTFKGKTFISTMKHATRFFISPEIQQVKEFILRRGTGNLLSCSITNISSSGGEFKSEDWLNGSLARTIKQMVNSDEVGTYICKGTIRDI...

XP_057765427.1
MDSNLYLSRKYNRMIACLFWNDTITIEWADFKGRKASKCDVTLEDAYGTQVTCVLWESFADELKSFMESKKNEDKEPVLVALQFAKISTFKGKTFISTMKHATRFFISPEIQQVKEFILRRGTGNLLSCSITNISSSGGEFKSEDWLNGSLARTIKQMVNSDEVGTYICKGTIRDIHPTESWFYEACGNDRCYKGIAKGSKVGDQCKKCKRPIGSIHIRYLMKVLINDDDDDMEQATYFTLFEDCALYFLKKTANQLMEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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