Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001466`

染色体: Chr05 坐标: 13431638-13435388 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001466`
名称	SmilChr05G001466
描述	transmembrane emp24 domain-containing protein p24beta2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13431638 - 13435388 / `+`

ID 对照

NCBI Gene ID	`LOC130986155`
GeneID	`130986155`
locus_tag	`-`
NCBI Name	`LOC130986155`
原始查询	`SmilChr05G001466`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transmembrane emp24 domain-containing protein p24beta2-like
产物	transmembrane emp24 domain-containing protein p24beta2-like
Arabidopsis	`AT3G07680` (p24beta2) emp24/gp25L/p24 family/GOLD family protein [Source:NCBI gene (formerly Entrezgene);Acc:819959] identity=72.1; qcov=0.981; evalue=1.09e-108; confidence=high
Rice	`Os08g0532900` - identity=73.2; qcov=0.986; evalue=2.5e-108; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0007030 (Golgi organization); GO:0030134 (COPII-coated ER to Golgi transport vesicle)
KEGG	-
Pfam	PF01105 (EMP24_GP25L)
InterPro	-
eggNOG	-
NR	GeneID:130986155

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057765430.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057765430.1`
3	Golgi apparatus	高尔基体	1.00000	`XP_057765430.1`
4	Cis-golgi network	Cis-golgi network	1.00000	`XP_057765431.1`
5	Golgi stack	高尔基堆	1.00000	`XP_057765431.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13433600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B98,C57,C80
`Chr5:13433630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B98,C57,C80
`Chr5:13434722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:13434910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,D3
`Chr5:13435012`	`GA`	`G`	1bp_deletion	frameshift_variant	60	A1,A11,A2,A7,A8,B100,B109,B114,B125,B127,B128,B13,B137,B14,B16,B23,B3,B30,B33,B34,B37,B47,B49,B57,B60,B63,B67,B68,B69,B71,B77,B78,B87,B90,B92,B99,C11,C22,C24,C26,C3,C30,C33,C36,C38,C41,C44,C48,C49,C50,C54,C60,C62,C68,C69,C73,C77,C87,C9,D9
`Chr5:13435043`	`TA`	`T`	1bp_deletion	frameshift_variant	41	A15,A16,A23,A25,A6,B101,B11,B114,B12,B129,B15,B19,B21,B25,B32,B34,B37,B42,B43,B5,B6,B60,B68,B74,B80,B86,B90,B92,C10,C21,C30,C39,C4,C40,C48,C55,C57,C65,C67,C82,D3
`Chr5:13435071`	`CTA`	`C`	2bp_deletion	frameshift_variant	58	A1,A2,A7,A8,B100,B104,B106,B114,B119,B127,B128,B13,B137,B14,B16,B23,B3,B30,B33,B37,B40,B47,B49,B57,B60,B63,B67,B69,B71,B77,B78,B86,B87,B90,B92,B99,C11,C22,C24,C26,C3,C30,C33,C36,C38,C41,C44,C49,C50,C54,C62,C68,C69,C73,C77,C87,C9,D9
`Chr5:13435154`	`TG`	`T`	1bp_deletion	frameshift_variant	23	B102,B120,B136,B19,B40,B44,B54,B75,B85,B86,B88,C19,C25,C33,C38,C41,C42,C47,C60,C73,C75,D1,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765430.1

256 aa

128

256

EMP24_GP25L

PF01105 EMP24_GP25L 29-162 aa

XP_057765431.1

208 aa

104

208

EMP24_GP25L

PF01105 EMP24_GP25L 29-200 aa

XP_057765432.1

208 aa

104

208

EMP24_GP25L

PF01105 EMP24_GP25L 29-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765430.1`	Pfam	`PF01105`	EMP24_GP25L	Domain	29	162	6.1e-27	95.6	emp24/gp25L/p24 family/GOLD
`XP_057765431.1`	Pfam	`PF01105`	EMP24_GP25L	Domain	29	200	4.2e-32	112.4	emp24/gp25L/p24 family/GOLD
`XP_057765432.1`	Pfam	`PF01105`	EMP24_GP25L	Domain	29	200	4.2e-32	112.4	emp24/gp25L/p24 family/GOLD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909449.1
ATGGTCATGTGGCTAATTTATAAGAATAACCCTAAAAACAAACATAGTAGTACGGGTGTCGGCTTCTTACTGGTGAGAGTTGGCAAAACCATGTCATAAGCAATGACTCCGCTTCCCCACTATACATACAAGAATAGATTCAGTCATTTACCGTCGCCCAAATCTATAATTTTTCCCACAGAGTCTTTGCTCGAAAACCTCGCGTGGATTTACGATCAAACAATTTTACAAGATGAGGCTTCCAGTTGCAGCAGTGGCTC...

XM_057909447.1
TCGGCTTCTTACTGGTGAGAGTTGGCAAAACCATGTCATAAGCAATGACTCCGCTTCCCCACTATACATACAAGAATAGATTCAGTCATTTACCGTCGCCCAAATCTATAATTTTTCCCACAGAGTCTTTGCTCGAAAACCTCGCGTGGATTTACGATCAAACAATTTTACAAGATGAGGCTTCCAGTTGCAGCAGTGGCTCTGATGGTAATTTTAGGCAGTTTTGGTGGGGCTTTTGGTATTAGATTTGTTATAGATAG...

CDS

3 records

下载 CDS FASTA

LOC130986155
ATGAGGCTTCCAGTTGCAGCAGTGGCTCTGATGGTAATTTTAGGCAGTTTTGGTGGGGCTTTTGGTATTAGATTTGTTATAGATAGAGAAGAGTGCTTTTCTCACAAGGTGGAGTATGGGAATACCGTTCATTTCTCATTTGTGGTGATTAAATCTGAGGGGTCATGGCATTACAGTGAAGATGGTGTAGACCTTGTGGTTAAGGGACCAAATGATGAACAGGTCCATGACATCCGCGACAAGACAAGTGACAAGCATGA...

Protein

3 records

下载 Protein FASTA

XP_057765430.1
MRLPVAAVALMVILGSFGGAFGIRFVIDREECFSHKVEYGNTVHFSFVVIKSEGSWHYSEDGVDLVVKGPNDEQVHDIRDKTSDKHEFVAYHQGIYRFCFTNKSPYHETIDFDVHAGHFLYHDEHAKDEHFKPLFEHIGKLEEALYNIQFEQHWLEAQTDRQAIGNLVTLRLFLANAYNLYNLVERCKHQFYSFIVAIMQRKCDYVGLFLVSVNERMSRGAIHKALFESAALVLASGLQVYILRRLFERKLGASRV

XP_057765431.1
MRLPVAAVALMVILGSFGGAFGIRFVIDREECFSHKVEYGNTVHFSFVVIKSEGSWHYSEDGVDLVVKGPNDEQVHDIRDKTSDKHEFVAYHQGIYRFCFTNKSPYHETIDFDVHAGHFLYHDEHAKDEHFKPLFEHIGKLEEALYNIQFEQHWLEAQTDRQAIVNERMSRGAIHKALFESAALVLASGLQVYILRRLFERKLGASRV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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