Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001470`

染色体: Chr05 坐标: 13481966-13490826 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001470`
名称	SmilChr05G001470
描述	uncharacterized SmilChr05G001470
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13481966 - 13490826 / `-`

ID 对照

NCBI Gene ID	`LOC130986159`
GeneID	`130986159`
locus_tag	`-`
NCBI Name	`LOC130986159`
原始查询	`SmilChr05G001470`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0539700; species=rice; confidence=low
产物	hit=Os12g0539700; species=rice; confidence=low
Arabidopsis	`AT5G28780` (AT5G28780) PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:832993] identity=42.1; qcov=0.189; evalue=2.17e-59; confidence=weak
Rice	`Os12g0539700` - identity=40.5; qcov=0.318; evalue=2.66e-109; confidence=low
GO	GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair)
KEGG	-
Pfam	PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom)
InterPro	-
eggNOG	-
NR	GeneID:130986159

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765435.1`
2	Chromosome	染色体	0.00000	`XP_057765435.1`
3	Centromere	着丝粒	0.00000	`XP_057765435.1`
4	Chromatin	染色质	0.00000	`XP_057765435.1`
5	Telomere	端粒	0.00000	`XP_057765435.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765435.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057765436.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057765437.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057765438.1

1499 aa

750

1499

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 376-558 aa PF05970 PIF1 1019-1236 aa PF21530 Pif1_2B_dom 1336-1382 aa

XP_057765439.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

XP_057765440.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

XP_057765441.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

XP_057765442.1

1436 aa

718

1436

Helitron_like_N

PIF1

Pif1_2B_dom

PF14214 Helitron_like_N 313-495 aa PF05970 PIF1 956-1173 aa PF21530 Pif1_2B_dom 1273-1319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765435.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765435.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057765435.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765436.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765436.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057765436.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765437.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765437.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057765437.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765438.1`	Pfam	`PF14214`	Helitron_like_N	Domain	376	558	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765438.1`	Pfam	`PF05970`	PIF1	Family	1019	1236	7.1e-95	317.5	PIF1-like helicase
`XP_057765438.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1336	1382	5.4e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765439.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765439.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.7e-95	317.6	PIF1-like helicase
`XP_057765439.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765440.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765440.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.7e-95	317.6	PIF1-like helicase
`XP_057765440.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765441.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765441.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.7e-95	317.6	PIF1-like helicase
`XP_057765441.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain
`XP_057765442.1`	Pfam	`PF14214`	Helitron_like_N	Domain	313	495	1.3e-62	212.1	Helitron helicase-like domain at N-terminus
`XP_057765442.1`	Pfam	`PF05970`	PIF1	Family	956	1173	6.7e-95	317.6	PIF1-like helicase
`XP_057765442.1`	Pfam	`PF21530`	Pif1_2B_dom	Domain	1273	1319	5.1e-23	81.2	DNA helicase Pif1, 2B domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057909458.1
AACCACTGGATATTAGCTAATTAACTTTTATATAAATAAGTTTTGTAATAAAGGCTCATTTTTTCTCATCTGCAGATTCACTTACAGTGCTCATATTAGCAAATCTCAGAAGCTTATATTACTCAAGAACAGTGATTCTAAATGAGAAAGCTAACAAAATCGTTGAAGATTACTGGCGTCAGATCAAATGCAGAAAATTCTACTGAATATTGGGATATTGGAGATGTTGTTCATGAATGTGAACATTGTTTTGCATTTTT...

XM_057909453.1
AACCACTGGATATTAGCTAATTAACTTTTATATAAATAAGTTTTGTAATAAAGGCTCATTTTTTCTCATCTGCAGATTCACTTACAGTGCTCATATTAGCAAATCTCAGAAGCTTATATTACTCAAGAACAGTGATTCTAAATGAGAAAGCTAACAAAATCGTTGAAGATTACTGGCGTCAGATCAAATGCAGAAAATTCTACTGATGTTGAAAGGTCTATCTCTTCAAATGTTGTGGAGAATGTAGATAGTGTTGTTGA...

CDS

8 records

下载 CDS FASTA

LOC130986159
ATGAGAAAGCTAACAAAATCGTTGAAGATTACTGGCGTCAGATCAAATGCAGAAAATTCTACTGAATATTGGGATATTGGAGATGTTGTTCATGAATGTGAACATTGTTTTGCATTTTTTTGGTATGAAGAAAGATTGGCGAAGACTGTTAATTCTACAAAACCCAAATATTCATTGTGTTGCATGCATGGAAAAATTGAACTTCCAAAAGCTATGTGTCCGCCAAAAGTATTATATGATCTTATTTTTGGAAATAATGC...

Protein

8 records

下载 Protein FASTA

XP_057765435.1
MRKLTKSLKITGVRSNAENSTDVERSISSNVVENVDSVVDFEDNGSKFIIIDKFKKQKRSFCVSSSPSDNSIIDRRKKKKVESQEYWDIGDVVHECEHCFAFFWYEERLAKTVNSTKPKYSLCCMHGKIELPKAMCPPKVLYDLIFGNNAKSKHYLQNIRSYNNMFGFTSMGGKIDHSINQGNTPPIFRLHGQNYHLIGSLMPMEGCPPKFAQLYIYDTDNEVHNRILSVRDVGNFNELHTEIVRDLQAMLDEQNVLAKS...

XP_057765436.1
MRKLTKSLKITGVRSNAENSTDVERSISSNVVENVDSVVDFEDNGSKFIIIDKFKKQKRSFCVSSSPSDNSIIDRRKKKKVESQEYWDIGDVVHECEHCFAFFWYEERLAKTVNSTKPKYSLCCMHGKIELPKAMCPPKVLYDLIFGNNAKSKHYLQNIRSYNNMFGFTSMGGKIDHSINQGNTPPIFRLHGQNYHLIGSLMPMEGCPPKFAQLYIYDTDNEVHNRILSVRDVGNFNELHTEIVRDLQAMLDEQNVLAKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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