Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001476`

染色体: Chr05 坐标: 13521324-13531799 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001476`
名称	SmilChr05G001476
描述	uncharacterized SmilChr05G001476
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13521324 - 13531799 / `-`

ID 对照

NCBI Gene ID	`LOC130986167`
GeneID	`130986167`
locus_tag	`-`
NCBI Name	`LOC130986167`
原始查询	`SmilChr05G001476`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inner centromere protein, ARK-binding region protein [Source:NCBI gene (formerly Entrezgene);Acc:835676]; symbol=WYR; hit=AT5G55820; species=arabidopsis; confidence=low
产物	inner centromere protein, ARK-binding region protein [Source:NCBI gene (formerly Entrezgene);Acc:835676]; symbol=WYR; hit=AT5G55820; species=arabidopsis; confidence=low
Arabidopsis	`AT5G55820` (WYR) inner centromere protein, ARK-binding region protein [Source:NCBI gene (formerly Entrezgene);Acc:835676] identity=32.1; qcov=0.387; evalue=3.45e-55; confidence=low
Rice	`Os09g0477700` - identity=30.8; qcov=0.201; evalue=5.48e-12; confidence=weak
GO	-
KEGG	-
Pfam	PF03941 (INCENP_ARK-bind)
InterPro	-
eggNOG	-
NR	GeneID:130986167

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765461.1`
2	Chromosome	染色体	0.60000	`XP_057765461.1`
3	Nuclear body	核内小体	0.60000	`XP_057765461.1`
4	Nucleoplasm	核质	0.60000	`XP_057765461.1`
5	Centromere	着丝粒	0.00000	`XP_057765461.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13523932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B80
`Chr5:13523959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C12,C14,C45,C47
`Chr5:13525459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:13525632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr5:13526167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B58,B74,C58,C75
`Chr5:13526174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,C15,C61
`Chr5:13526478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr5:13527657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr5:13527736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,C23
`Chr5:13527808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B57,C24
`Chr5:13527874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B61,B8
`Chr5:13527880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B58,B74,C58,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765461.1

1726 aa

863

1726

INCENP_ARK-bind

PF03941 INCENP_ARK-bind 1661-1713 aa

XP_057765462.1

1723 aa

862

1723

INCENP_ARK-bind

PF03941 INCENP_ARK-bind 1658-1710 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765461.1`	Pfam	`PF03941`	INCENP_ARK-bind	Family	1661	1713	3.1e-06	27.7	Inner centromere protein, ARK binding region
`XP_057765462.1`	Pfam	`PF03941`	INCENP_ARK-bind	Family	1658	1710	3.1e-06	27.7	Inner centromere protein, ARK binding region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909478.1
CTAGATGTGATCCTCATCGTTCACTCAACGATCACACATACTCTGACGAACGATCTCAAATCGCAGCTTCAGGTTGGTTTTTACCATCGATGAATTATCTATAAACGCACAGCGTTGTGGCGGAAGAAGATGTCGACGGCGGAGAAGATGAAGGCGGCGGAGAAGCTGTTGTCGCTACTCTCCGAGCGGAAGAAATCGATAATCGAACACGTGAAGCAACAAACGGAGTCGTACAGCCAGCACCTCGCTTCCAAACTCCT...

XM_057909479.1
GTGATCCTCATCGTTCACTCAACGATCACACATACTCTGACGAACGATCTCAAATCGCAGCTTCAGGTTGGTTTTTACCATCGATGAATTATCTATAAACGCACAGCGTTGTGGCGGAAGAAGATGTCGACGGCGGAGAAGATGAAGGCGGCGGAGAAGCTGTTGTCGCTACTCTCCGAGCGGAAGAAATCGATAATCGAACACGTGAAGCAACAAACGGAGTCGTACAGCCAGCACCTCGCTTCCAAACTCCTCATTGA...

CDS

2 records

下载 CDS FASTA

LOC130986167
ATGTCGACGGCGGAGAAGATGAAGGCGGCGGAGAAGCTGTTGTCGCTACTCTCCGAGCGGAAGAAATCGATAATCGAACACGTGAAGCAACAAACGGAGTCGTACAGCCAGCACCTCGCTTCCAAACTCCTCATTGAAGGAATTGACCCTCCCTCTTGGCTTCGGGACCCTAGTAACTCGGCCTCGAAAGAGCTAAATGAAGAAGACCTTATCTCCAGACTTCTAAGTCAGTATCCCCAACCATCAGCCCGTTGCTCTAT...

Protein

2 records

下载 Protein FASTA

XP_057765461.1
MSTAEKMKAAEKLLSLLSERKKSIIEHVKQQTESYSQHLASKLLIEGIDPPSWLRDPSNSASKELNEEDLISRLLSQYPQPSARCSIACYPGHKNLMITGAHEKFSDGDVELPAANEDLDRKNDPAAPGFSGEDHGECALKLDASAASREDQTDERILNNHAVDHEKFSHGDVVEIPAANEDLDQKNDPSAPGFNSEDHGECVLKLDASAASPEDQTDERILNNYTGIQRSKSRQKALELRSSAKAPAKSGVRHSSINDV...

XP_057765462.1
MSTAEKMKAAEKLLSLLSERKKSIIEHVKQQTESYSQHLASKLLIEGIDPPSWLRDPSNSASKELNEEDLISRLLSQYPQPSARCSIACYPGHKNLMITGAHEKFSDGDVELPAANEDLDRKNDPAAPGFSGEDHGECALKLDASAASREDQTDERILNNHAVDHEKFSHGDVVEIPAANEDLDQKNDPSAPGFNSEDHGECVLKLDASAASPEDQTDERILNNYTGIQRSKSRQKALELRSSAKAPAKSGVRHSSINDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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