Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001492`

染色体: Chr05 坐标: 13687185-13691658 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001492`
名称	SmilChr05G001492
描述	uncharacterized SmilChr05G001492
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13687185 - 13691658 / `+`

ID 对照

NCBI Gene ID	`LOC130986184`
GeneID	`130986184`
locus_tag	`-`
NCBI Name	`LOC130986184`
原始查询	`SmilChr05G001492`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835654]; symbol=AT5G55600; hit=AT5G55600; species=arabidopsis; confidence=high
产物	At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835654]; symbol=AT5G55600; hit=AT5G55600; species=arabidopsis; confidence=high
Arabidopsis	`AT5G55600` (AT5G55600) At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835654] identity=54.3; qcov=0.848; evalue=0; confidence=high
Rice	`Os07g0607300` (P0493C06.37-1) - identity=40; qcov=1.01; evalue=2.41e-142; confidence=medium
GO	GO:0003682 (chromatin binding)
KEGG	-
Pfam	PF01426 (BAH); PF05641 (Agenet)
InterPro	-
eggNOG	-
NR	GeneID:130986184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765486.1`
2	Chromosome	染色体	0.00000	`XP_057765486.1`
3	Centromere	着丝粒	0.00000	`XP_057765486.1`
4	Chromatin	染色质	0.00000	`XP_057765486.1`
5	Telomere	端粒	0.00000	`XP_057765486.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13689686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,C21,C31
`Chr5:13689952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C70
`Chr5:13690114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr5:13690198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:13690593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr5:13690620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,D10
`Chr5:13690662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:13690678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr5:13690725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13690992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr5:13691126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13691345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765486.1

643 aa

322

643

BAH

Agenet

PF01426 BAH 159-250 aa PF05641 Agenet 358-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765486.1`	Pfam	`PF01426`	BAH	Domain	159	250	3.9e-11	43.6	BAH domain
`XP_057765486.1`	Pfam	`PF05641`	Agenet	Domain	358	430	8.1e-14	52.6	Agenet domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909503.1
AAATAGCACGTATAAAATTGAATAAACGAAAAGTTAAAAAATAAAAAGGAGACATTTATTTGCCCTTGACCTTGTTGAGTTAGTTGAACCCTTTTCTTCCTTACCGTCTCCCATTCTTGAAGCCCATCTCTCTTCCTTCTCCTTCCCACCTCCACCCTTCTAACTATCTTGCATTTCTGCTACTTTTCCTATTTTTTTCTCTACTCTTCTTTCTCTTTCCATCAATTTTTCTCTCCGCCAACCTTTTCTCTTTGAGTTAA...

CDS

1 records

下载 CDS FASTA

LOC130986184
ATGGCTGTCAATGAGCGATATTTTGTGGAGTGGAAGGAGCAATATGTGTCAAAAGAGAGGGGCAACCGCGTGGTTCACTATTTTCTGAAAGATAATTCAGGGGAATCAATTCTTGCTGTTGTGGGCACTGAAAGGAGTGTTAGGCACATGTTCTATGTTGTATCTGATGAGTTCTTTAACGCCCATGGGGCCGATAACTCCGTGCAGGCCGGGTTCAGATGGAGGTCGAGGAGGGAGGTGGTGAACTGGCTTACTTCCAT...

Protein

1 records

下载 Protein FASTA

XP_057765486.1
MAVNERYFVEWKEQYVSKERGNRVVHYFLKDNSGESILAVVGTERSVRHMFYVVSDEFFNAHGADNSVQAGFRWRSRREVVNWLTSMLSKQHRQGDRAMSPKGNHTAELNAQQTQMLPHKGRIARNLKGHHLDISWSGSAWACGKQLKHYPEFCRNGISISVQSFVFVMAEKENRYIAYLEDMYEDRKCQKKVKVRWFHHNKEVKGVVSLRNPDPKEVFITPYVQVISAECVDGPAIVLTREHYEKCLEVFPHDLLGGLH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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