当前解析结果
SmilChr05G001497| 统一新 Gene ID | SmilChr05G001497 |
|---|---|
| 名称 | SmilChr05G001497 |
| 描述 | salviol synthase-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13743891 - 13745756 / - |
| NCBI Gene ID | LOC130986190 |
|---|---|
| GeneID | 130986190 |
| locus_tag | - |
| NCBI Name | LOC130986190 |
| 原始查询 | SmilChr05G001497 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | salviol synthase-like |
| 产物 | salviol synthase-like |
| Arabidopsis | AT1G13080 (CYP71B2)cytochrome P450, family 71, subfamily B, polypeptide 2 [Source:NCBI gene (formerly Entrezgene);Acc:837865] identity=39.8; qcov=1; evalue=4.76e-126; confidence=medium |
| Rice | Os03g0593600 (CYP71W1)- identity=44.2; qcov=0.946; evalue=1.57e-142; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986190 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057765490.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057765490.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765490.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765490.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765490.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13744418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:13744431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C12,C14,C45,C47 |
Chr5:13744514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13744541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B6,C37,C6 |
Chr5:13744577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B6,C37 |
Chr5:13744584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B6,C37 |
Chr5:13744595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B6,C37 |
Chr5:13744622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr5:13744628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr5:13744631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr5:13744636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr5:13744776 |
G |
GAC |
2bp_insertion | frameshift_variant | 3 | B33,B68,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765490.1PF00067
p450 35-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765490.1 |
Pfam | PF00067 |
p450 | Domain | 35 | 481 | 5.4e-98 | 329.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。