Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001504`

染色体: Chr05 坐标: 13790352-13796926 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001504`
名称	SmilChr05G001504
描述	ABC transporter C family member 3-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13790352 - 13796926 / `+`

ID 对照

NCBI Gene ID	`LOC130986195`
GeneID	`130986195`
locus_tag	`-`
NCBI Name	`LOC130986195`
原始查询	`SmilChr05G001504`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter C family member 3-like
产物	ABC transporter C family member 3-like
Arabidopsis	`AT3G13080` (ABCC3) multidrug resistance-associated protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:820496] identity=59.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0173900` (OsABCC3) - identity=61.8; qcov=0.903; evalue=0; confidence=high
GO	GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	-
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:130986195

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057765493.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057765493.1`
3	Cell membrane	细胞膜	0.40000	`XP_057765493.1`
4	Nucleus	细胞核	0.00000	`XP_057765493.1`
5	Chromosome	染色体	0.00000	`XP_057765493.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13791042`	`TAC`	`T`	2bp_deletion	frameshift_variant	23	A11,A15,A18,A23,A24,A3,B1,B118,B127,B18,B73,B76,B86,C42,C43,C45,C53,C55,C65,D10,D11,D3,D8
`Chr5:13791362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:13791398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,C12,C14,C45,C47
`Chr5:13791437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,C13
`Chr5:13791449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,B7
`Chr5:13791564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,C31,C35
`Chr5:13791579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:13791591`	`ATT`	`A`	2bp_deletion	frameshift_variant	3	B27,C60,D4
`Chr5:13791591`	`ATT`	`A`	2bp_deletion	CDS_variant	3	B27,C60,D4
`Chr5:13791594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,C12,C14,C45,C47
`Chr5:13791595`	`TG`	`T`	1bp_deletion	frameshift_variant	25	A18,A20,B104,B107,B11,B115,B119,B133,B16,B71,C17,C18,C27,C32,C34,C37,C40,C41,C54,C60,C68,C70,C81,C83,D9
`Chr5:13791625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B44,C19,C31,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765493.1

1492 aa

746

1492

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 310-577 aa PF00005 ABC_tran 642-776 aa PF00664 ABC_membrane 934-1176 aa PF00005 ABC_tran 1266-1414 aa

XP_057765494.1

1151 aa

576

1151

ABC_membrane

ABC_tran

ABC_membrane

PF00664 ABC_membrane 310-577 aa PF00005 ABC_tran 642-776 aa PF00664 ABC_membrane 934-1136 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765493.1`	Pfam	`PF00664`	ABC_membrane	Family	310	577	9.8e-54	183.6	ABC transporter transmembrane region
`XP_057765493.1`	Pfam	`PF00005`	ABC_tran	Domain	642	776	4.4e-51	173.8	ABC transporter
`XP_057765493.1`	Pfam	`PF00664`	ABC_membrane	Family	934	1176	9.8e-54	183.6	ABC transporter transmembrane region
`XP_057765493.1`	Pfam	`PF00005`	ABC_tran	Domain	1266	1414	4.4e-51	173.8	ABC transporter
`XP_057765494.1`	Pfam	`PF00664`	ABC_membrane	Family	310	577	3e-52	178.7	ABC transporter transmembrane region
`XP_057765494.1`	Pfam	`PF00005`	ABC_tran	Domain	642	776	7.4e-21	75.9	ABC transporter
`XP_057765494.1`	Pfam	`PF00664`	ABC_membrane	Family	934	1136	3e-52	178.7	ABC transporter transmembrane region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009089210.1
AAAACCTTCTTCCCGGCATCACTAGAAATCTGGCTGCTCAACTCTCTCTCCCTCTAAAATCAAAAATCCCCAATTTGTTGCCGTCTCTTTCACCGGCGAGGGACGGATCAGCAGACCACTGCCACGGTCATGACCGCTGTGGCCAATTTATTTTTCAGTTCTTATTCTCACACACTTGCGCTATTTTGCTCTCAGACACCAGCCAGTTAGCCACCAAATTCCTAGTCGCCTCACAAATTAAAAGTACATAAAGCTGTTTC...

XR_009089209.1
AAACCTTCTTCCCGGCATCACTAGAAATCTGGCTGCTCAACTCTCTCTCCCTCTAAAATCAAAAATCCCCAATTTGTTGCCGTCTCTTTCACCGGCGAGGGACGGATCAGCAGACCACTGCCACGGTCATGACCGCTGTGGCCAATTTATTTTTCAGTTCTTATTCTCACACACTTGCGCTATTTTGCTCTCAGACACCAGCCAGTTAGCCACCAAATTCCTAGTCGCCTCACAAATTAAAAGTACATAAAGCTGTTTCT...

CDS

2 records

下载 CDS FASTA

LOC130986195
ATGTTCGTTTTTTCTTTGTACCTTTTCTCCTTTGAAGGCATGGGAGCTGATTTTCTGCTTAATCCGGCTTTCTTGCGTTTCTTCACGGCCTCTCTGCACCTGCTTATGTTGGTTCTCCTTTTTACTTCATGGCTCTACCAAAAACTCAAGGGCAGTCGGGATGATCAAAACCACAAACACACCATTGGATATCACCGTCTCTCCTCCTATAAAACCACCCTCTTTTCCTGTTTGGGACTTTCATTTTTCTGTCTCATCCT...

Protein

2 records

下载 Protein FASTA

XP_057765493.1
MFVFSLYLFSFEGMGADFLLNPAFLRFFTASLHLLMLVLLFTSWLYQKLKGSRDDQNHKHTIGYHRLSSYKTTLFSCLGLSFFCLILCMLSLFFWYRNGYSDEKILTLADLGVKALAWLALYLFLQFGFLNSRETKYPLSLRLWWVLFLSLSCYCIAIDVLNLINHKSVSTLFWASDIVSVLMGLLLCYIVFFCKKTDEDTVLQEPLLNNGARNGTEFNTPTNWDETVTPYTIAGIFSLFTFSWMAPLIALGRTKALDLK...

XP_057765494.1
MFVFSLYLFSFEGMGADFLLNPAFLRFFTASLHLLMLVLLFTSWLYQKLKGSRDDQNHKHTIGYHRLSSYKTTLFSCLGLSFFCLILCMLSLFFWYRNGYSDEKILTLADLGVKALAWLALYLFLQFGFLNSRETKYPLSLRLWWVLFLSLSCYCIAIDVLNLINHKSVSTLFWASDIVSVLMGLLLCYIVFFCKKTDEDTVLQEPLLNNGARNGTEFNTPTNWDETVTPYTIAGIFSLFTFSWMAPLIALGRTKALDLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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