Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001505`

染色体: Chr05 坐标: 13797973-13803947 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001505`
名称	SmilChr05G001505
描述	ABC transporter C family member 3-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13797973 - 13803947 / `+`

ID 对照

NCBI Gene ID	`LOC130986199`
GeneID	`130986199`
locus_tag	`-`
NCBI Name	`LOC130986199`
原始查询	`SmilChr05G001505`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter C family member 3-like
产物	ABC transporter C family member 3-like
Arabidopsis	`AT3G13080` (ABCC3) multidrug resistance-associated protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:820496] identity=73; qcov=1; evalue=0; confidence=high
Rice	`Os01g0173900` (OsABCC3) - identity=70.2; qcov=0.999; evalue=0; confidence=high
GO	GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	-
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:130986199

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	1.00000	`XP_057765495.1`
2	Vacuole	液泡	0.80000	`XP_057765496.1`
3	Cell membrane	细胞膜	0.60000	`XP_057765496.1`
4	Nucleus	细胞核	0.00000	`XP_057765495.1`
5	Chromosome	染色体	0.00000	`XP_057765495.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13798107`	`C`	`T`	EMS_canonical_SNV	stop_gained	13	A11,A18,A3,B118,B127,B18,B73,C43,C45,C55,D10,D11,D8
`Chr5:13798189`	`A`	`AC`	1bp_insertion	frameshift_variant	2	A20,B11
`Chr5:13798189`	`A`	`AC`	1bp_insertion	CDS_variant	2	A20,B11
`Chr5:13798199`	`C`	`CA`	1bp_insertion	frameshift_variant	5	A1,B76,C14,C57,D3
`Chr5:13798199`	`C`	`CA`	1bp_insertion	CDS_variant	5	A1,B76,C14,C57,D3
`Chr5:13798202`	`TCC`	`T`	2bp_deletion	frameshift_variant	4	A1,B76,C14,C57
`Chr5:13798202`	`TCC`	`T`	2bp_deletion	CDS_variant	4	A1,B76,C14,C57
`Chr5:13798210`	`CAA`	`C`	2bp_deletion	frameshift_variant	4	A1,B76,C14,C57
`Chr5:13798210`	`CAA`	`C`	2bp_deletion	CDS_variant	4	A1,B76,C14,C57
`Chr5:13798219`	`CG`	`C`	1bp_deletion	frameshift_variant	4	A1,B76,C14,C57
`Chr5:13798219`	`CG`	`C`	1bp_deletion	CDS_variant	4	A1,B76,C14,C57
`Chr5:13798230`	`T`	`TGA`	2bp_insertion	stop_gained,frameshift_variant	4	B11,B120,B140,B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765495.1

1570 aa

785

1570

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 381-648 aa PF00005 ABC_tran 713-847 aa PF00664 ABC_membrane 1002-1245 aa PF00005 ABC_tran 1335-1483 aa

XP_057765496.1

1021 aa

510

1021

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 4-99 aa PF00005 ABC_tran 164-298 aa PF00664 ABC_membrane 453-696 aa PF00005 ABC_tran 786-934 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765495.1`	Pfam	`PF00664`	ABC_membrane	Family	381	648	7.5e-52	177.4	ABC transporter transmembrane region
`XP_057765495.1`	Pfam	`PF00005`	ABC_tran	Domain	713	847	1.9e-50	171.8	ABC transporter
`XP_057765495.1`	Pfam	`PF00664`	ABC_membrane	Family	1002	1245	7.5e-52	177.4	ABC transporter transmembrane region
`XP_057765495.1`	Pfam	`PF00005`	ABC_tran	Domain	1335	1483	1.9e-50	171.8	ABC transporter
`XP_057765496.1`	Pfam	`PF00664`	ABC_membrane	Family	4	99	1.3e-35	124.2	ABC transporter transmembrane region
`XP_057765496.1`	Pfam	`PF00005`	ABC_tran	Domain	164	298	6.5e-51	173.2	ABC transporter
`XP_057765496.1`	Pfam	`PF00664`	ABC_membrane	Family	453	696	1.3e-35	124.2	ABC transporter transmembrane region
`XP_057765496.1`	Pfam	`PF00005`	ABC_tran	Domain	786	934	6.5e-51	173.2	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909512.1
AAAAAGTAATCCACAAATAATGGAAAAGGAAAAGTCGATTCTTTTGCCAGTGGATGCGGGGGTATGAGTATCTTCTTGATAAACACAAGTATATAAAGCCGAGTTACCAACTTACATTTTTTCATCACTCACTCCAATCCATACTACCACACTTGACTACCCGCCGACTAAAGGAGAAGAAGCGACCAACCTTCACGGCCACCACAGTCCCACACCAAATGGGATTCCTTCCAACGACAAATTCATCGACGGGTATGTCT...

XM_057909513.1
GAGTATCTTCTTGATAAACACAAGTATATAAAGCCGAGTTACCAACTTACATTTTTTCATCACTCACTCCAATCCATACTACCACACTTGACTACCCGCCGACTAAAGGAGAAGAAGCGACCAACCTTCACGGCCACCACAGTCCCACACCAAATGGGATTCCTTCCAACGACAAATTCATCGACGGGAGAAATTTCAGGACGAGCTAATGAAATGCAAAGATAAAAGGATGAAGGCGACTTCAGAAGTCTTGAGGAACA...

CDS

2 records

下载 CDS FASTA

LOC130986199
ATGCGGGGGTATGAGTATCTTCTTGATAAACACAAGTATATAAAGCCGAGTTACCAACTTACATTTTTTCATCACTCACTCCAATCCATACTACCACACTTGACTACCCGCCGACTAAAGGAGAAGAAGCGACCAACCTTCACGGCCACCACAGTCCCACACCAAATGGGATTCCTTCCAACGACAAATTCATCGACGGGTATGTCTGTTTTCCTCTCCGATTCCCGCCTTTTTCCCTTTGGTGACATGGGAGGTGGCCG...

LOC130986199
ATGAAATGCAAAGATAAAAGGATGAAGGCGACTTCAGAAGTCTTGAGGAACATGAGAATCCTTAAACTTCAGGCTTGGGAGCTGAAGTTTCTCTCTAGAATTCAGGATCTTAGGAGTGTAGAAACGGGGTGGTTGGCAAAATATCTTTATACGACAGCCTTCACCACATTTGTCTTTTGGGGTGCTCCTACGTTTGTGTCTGTGGTAACTTTTGGTTCTTGTATGCTGATGGGAATCCCACTTGAGTCGGGAAAGATACT...

Protein

2 records

下载 Protein FASTA

XP_057765495.1
MRGYEYLLDKHKYIKPSYQLTFFHHSLQSILPHLTTRRLKEKKRPTFTATTVPHQMGFLPTTNSSTGMSVFLSDSRLFPFGDMGGGRDFLFNPILLRFLTASVHLILLFIVLVSWLHKKFRSDGDENHKHSGTTINNVSYYKTTRFSSLALSFFNLTLCLLNLFYWYRNGWSDEKILTLSDLAVKTVSWLSLYLFLHIYFSNSKETKYPLVLRLWWLLFFCVSCYCLVTDLLYFEKAKYLSILFWASDIVSILLSLVFCF...

XP_057765496.1
MKCKDKRMKATSEVLRNMRILKLQAWELKFLSRIQDLRSVETGWLAKYLYTTAFTTFVFWGAPTFVSVVTFGSCMLMGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRIASFLSVDDLPPDVVEKLPVGGSDIAIEVINGNFSWDVLSPSPTLRDINFRVSPGMRVAICGMVGSGKSSLLSSILGEIPKISGAVSLSGSKAYVAQSAWIQSGKIEENILFGKEMDRQRYNRVLEACSLNKDLEILPFGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器