Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001518`

染色体: Chr05 坐标: 13906375-13912714 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001518`
名称	SmilChr05G001518
描述	probable WRKY transcription factor 20
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13906375 - 13912714 / `-`

ID 对照

NCBI Gene ID	`LOC130986210`
GeneID	`130986210`
locus_tag	`-`
NCBI Name	`LOC130986210`
原始查询	`SmilChr05G001518`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable WRKY transcription factor 20
产物	probable WRKY transcription factor 20
Arabidopsis	`AT4G26640` (WRKY20) WRKY family transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:828771] identity=58.6; qcov=0.681; evalue=7.6e-120; confidence=high
Rice	`Os07g0583700` (OsWRKY87) - identity=48.1; qcov=0.862; evalue=1.24e-105; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03106 (WRKY)
InterPro	-
eggNOG	-
NR	GeneID:130986210

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765511.1`
2	Chromosome	染色体	0.00000	`XP_057765511.1`
3	Centromere	着丝粒	0.00000	`XP_057765511.1`
4	Chromatin	染色质	0.00000	`XP_057765511.1`
5	Telomere	端粒	0.00000	`XP_057765511.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13906489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr5:13906618`	`GCT`	`G`	2bp_deletion	frameshift_variant	48	A14,A19,A7,A9,B123,B129,B13,B133,B135,B136,B15,B17,B28,B4,B40,B41,B49,B51,B69,B75,B79,B81,B83,B84,B87,B95,C1,C13,C17,C19,C20,C22,C23,C27,C41,C44,C46,C5,C53,C59,C64,C66,C67,C7,C71,C79,C81,D2
`Chr5:13906621`	`GC`	`G`	1bp_deletion	frameshift_variant	48	A14,A19,A7,A9,B123,B129,B13,B133,B135,B136,B15,B17,B28,B4,B40,B41,B49,B51,B69,B75,B79,B81,B83,B84,B87,B95,C1,C13,C17,C19,C20,C22,C23,C27,C41,C44,C46,C5,C53,C59,C64,C66,C67,C7,C71,C79,C81,D2
`Chr5:13908969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B38,B39,B79,B86
`Chr5:13909034`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C7
`Chr5:13909034`	`AT`	`A`	1bp_deletion	CDS_variant	1	C7
`Chr5:13909037`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C7
`Chr5:13909037`	`AT`	`A`	1bp_deletion	CDS_variant	1	C7
`Chr5:13909944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13910035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:13910816`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B13
`Chr5:13910816`	`AT`	`A`	1bp_deletion	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765511.1

548 aa

274

548

WRKY

PF03106 WRKY 220-276 aa PF03106 WRKY 389-446 aa

XP_057765512.1

496 aa

248

496

WRKY

PF03106 WRKY 220-276 aa PF03106 WRKY 356-394 aa

XP_057765513.1

473 aa

236

473

WRKY

PF03106 WRKY 145-201 aa PF03106 WRKY 314-371 aa

XP_057765514.1

473 aa

236

473

WRKY

PF03106 WRKY 145-201 aa PF03106 WRKY 314-371 aa

XP_057765516.1

458 aa

229

458

WRKY

PF03106 WRKY 130-186 aa PF03106 WRKY 299-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765511.1`	Pfam	`PF03106`	WRKY	Domain	220	276	4.5e-52	174.8	WRKY DNA -binding domain
`XP_057765511.1`	Pfam	`PF03106`	WRKY	Domain	389	446	4.5e-52	174.8	WRKY DNA -binding domain
`XP_057765512.1`	Pfam	`PF03106`	WRKY	Domain	220	276	1.9e-39	134.4	WRKY DNA -binding domain
`XP_057765512.1`	Pfam	`PF03106`	WRKY	Domain	356	394	1.9e-39	134.4	WRKY DNA -binding domain
`XP_057765513.1`	Pfam	`PF03106`	WRKY	Domain	145	201	3.1e-52	175.4	WRKY DNA -binding domain
`XP_057765513.1`	Pfam	`PF03106`	WRKY	Domain	314	371	3.1e-52	175.4	WRKY DNA -binding domain
`XP_057765514.1`	Pfam	`PF03106`	WRKY	Domain	145	201	3.1e-52	175.4	WRKY DNA -binding domain
`XP_057765514.1`	Pfam	`PF03106`	WRKY	Domain	314	371	3.1e-52	175.4	WRKY DNA -binding domain
`XP_057765516.1`	Pfam	`PF03106`	WRKY	Domain	130	186	2.8e-52	175.5	WRKY DNA -binding domain
`XP_057765516.1`	Pfam	`PF03106`	WRKY	Domain	299	356	2.8e-52	175.5	WRKY DNA -binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057909529.1
TTTCTTCAATCTAATAAATCAATCTCTACTCTTTCTCATTCCAGCGCATCCCAAAAACAAGCAATTGAATAATACAGGAATGAAGTAAAAACAAAATAGGGATTGAATGATTGGCCCCTCAATCTGTTGACAAGATTTTACCCTTCTTTTGGCAGAGATGTGGACAAGAAGGAAAAGCTTTAATAATTTTGGCTTACAGTGTAAAACTTTGATTGTTGAGAGAGCAAAACGGGGTTAAATGTAAAAAAAAGAGAAAAGAA...

XM_057909528.1
TTTCTTCAATCTAATAAATCAATCTCTACTCTTTCTCATTCCAGCGCATCCCAAAAACAAGCAATTGAATAATACAGGAATGAAGTAAAAACAAAATAGGGATTGAATGATTGGCCCCTCAATCTGTTGACAAGATTTTACCCTTCTTTTGGCAGAGATGTGGACAAGAAGGAAAAGCTTTAATAATTTTGGCTTACAGTGTAAAACTTTGATTGTTGAGAGAGCAAAACGGGGTTAAATGTAAAAAAAAGAGAAAAGAA...

CDS

5 records

下载 CDS FASTA

LOC130986210
ATGGAAGACCGCTCCCACTCACTGCCTCACTACTCCCACCCGCACTCCGAAAACGTCACCTCAGCTCACGATCACGTCACCGATGCCGGCGGATCCACCAACGGAGCTAGGTACCGCCTCATGTCCCCGGCCAAGCTCCCGATCTCTAGGTCTACTTGCATTACTATTCCTCCCGGTCTCAGCCCGACCTCCTTCCTCGAGTCTCCCGTTCTTCTCTCTAACATTAAGGCTGAGCCTTCTCCGACCACGGGTTCCTTTTT...

Protein

5 records

下载 Protein FASTA

XP_057765511.1
MEDRSHSLPHYSHPHSENVTSAHDHVTDAGGSTNGARYRLMSPAKLPISRSTCITIPPGLSPTSFLESPVLLSNIKAEPSPTTGSFFKPQMMQSSGENAAIMLEKNFASGNAVDERTSSGFEFRFHTGVSTTSGLSSAGMSIPVGMNRNGLVTHQDQRYSQSAAPSSLASQSHAVARQDSSVYDNIDESNQGAQSNTGTQASVSEHKDSSSSVSAERTSEDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP...

XP_057765512.1
MEDRSHSLPHYSHPHSENVTSAHDHVTDAGGSTNGARYRLMSPAKLPISRSTCITIPPGLSPTSFLESPVLLSNIKAEPSPTTGSFFKPQMMQSSGENAAIMLEKNFASGNAVDERTSSGFEFRFHTGVSTTSGLSSAGMSIPVGMNRNGLVTHQDQRYSQSAAPSSLASQSHAVARQDSSVYDNIDESNQGAQSNTGTQASVSEHKDSSSSVSAERTSEDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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