当前解析结果
SmilChr05G001526| 统一新 Gene ID | SmilChr05G001526 |
|---|---|
| 名称 | SmilChr05G001526 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13987881 - 13988477 / - |
| NCBI Gene ID | LOC131025542 |
|---|---|
| GeneID | 131025542 |
| locus_tag | - |
| NCBI Name | LOC131025542 |
| 原始查询 | SmilChr05G001526 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=46.6; qcov=0.965; evalue=8.79e-56; confidence=high |
| Rice | Os10g0432200- identity=47.6; qcov=0.955; evalue=1.45e-58; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025542 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811318.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057811318.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811318.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811318.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811318.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13987961 |
CA |
C |
1bp_deletion | frameshift_variant | 18 | B121,B132,B138,B17,B36,B45,B48,B70,B71,B83,C10,C15,C34,C36,C38,C4,C62,C83 |
Chr5:13988034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr5:13988077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr5:13988092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B101,B27,B70 |
Chr5:13988100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:13988111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B117,B140,B46 |
Chr5:13988117 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B117,B140,B46 |
Chr5:13988150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:13988218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B7,C69 |
Chr5:13988261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:13988269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B117,B140,B46 |
Chr5:13988297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。