当前解析结果
SmilChr05G001531| 统一新 Gene ID | SmilChr05G001531 |
|---|---|
| 名称 | SmilChr05G001531 |
| 描述 | probable alpha-amylase 2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14020095 - 14025912 / - |
| NCBI Gene ID | LOC130986222 |
|---|---|
| GeneID | 130986222 |
| locus_tag | - |
| NCBI Name | LOC130986222 |
| 原始查询 | SmilChr05G001531 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable alpha-amylase 2 |
| 产物 | probable alpha-amylase 2 |
| Arabidopsis | AT1G76130 (AMY2)alpha-amylase-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:843945] identity=80.2; qcov=0.983; evalue=0; confidence=high |
| Rice | Os01g0715400 (OsSTA30)- identity=51.3; qcov=0.966; evalue=2.3e-144; confidence=high |
| GO | GO:0004556 (alpha-amylase activity); GO:0005509 (calcium ion binding); GO:0005975 (carbohydrate metabolic process) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00128 (Alpha-amylase); PF07821 (Alpha-amyl_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986222 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057765541.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057765541.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765541.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765541.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765541.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14020490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:14020493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B117,B140,B46 |
Chr5:14021505 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B108 |
Chr5:14021505 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B108 |
Chr5:14021765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:14022121 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B26,C10,C3 |
Chr5:14022121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C10,C3 |
Chr5:14022134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B27 |
Chr5:14022454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B101,B27,B70 |
Chr5:14023269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B7,C11,C69 |
Chr5:14023286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr5:14023305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B41,B91,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765541.1PF00128
Alpha-amylase 42-112 aa
PF07821
Alpha-amyl_C2 354-409 aa
XP_057765542.1PF00128
Alpha-amylase 42-112 aa
PF07821
Alpha-amyl_C2 354-409 aa
XP_057765544.1PF00128
Alpha-amylase 42-112 aa
PF07821
Alpha-amyl_C2 354-409 aa
XP_057765545.1PF00128
Alpha-amylase 42-112 aa
PF07821
Alpha-amyl_C2 354-409 aa
XP_057765546.1PF00128
Alpha-amylase 42-112 aa
PF07821
Alpha-amyl_C2 354-409 aa
XP_057765547.1PF00128
Alpha-amylase 42-112 aa
PF07821
Alpha-amyl_C2 354-409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765541.1 |
Pfam | PF00128 |
Alpha-amylase | Domain | 42 | 112 | 6.9e-10 | 39.4 | Alpha amylase, catalytic domain |
XP_057765541.1 |
Pfam | PF07821 |
Alpha-amyl_C2 | Domain | 354 | 409 | 6e-22 | 78.5 | Alpha-amylase C-terminal beta-sheet domain |
XP_057765542.1 |
Pfam | PF00128 |
Alpha-amylase | Domain | 42 | 112 | 6.9e-10 | 39.4 | Alpha amylase, catalytic domain |
XP_057765542.1 |
Pfam | PF07821 |
Alpha-amyl_C2 | Domain | 354 | 409 | 6e-22 | 78.5 | Alpha-amylase C-terminal beta-sheet domain |
XP_057765544.1 |
Pfam | PF00128 |
Alpha-amylase | Domain | 42 | 112 | 6.9e-10 | 39.4 | Alpha amylase, catalytic domain |
XP_057765544.1 |
Pfam | PF07821 |
Alpha-amyl_C2 | Domain | 354 | 409 | 6e-22 | 78.5 | Alpha-amylase C-terminal beta-sheet domain |
XP_057765545.1 |
Pfam | PF00128 |
Alpha-amylase | Domain | 42 | 112 | 6.9e-10 | 39.4 | Alpha amylase, catalytic domain |
XP_057765545.1 |
Pfam | PF07821 |
Alpha-amyl_C2 | Domain | 354 | 409 | 6e-22 | 78.5 | Alpha-amylase C-terminal beta-sheet domain |
XP_057765546.1 |
Pfam | PF00128 |
Alpha-amylase | Domain | 42 | 112 | 6.9e-10 | 39.4 | Alpha amylase, catalytic domain |
XP_057765546.1 |
Pfam | PF07821 |
Alpha-amyl_C2 | Domain | 354 | 409 | 6e-22 | 78.5 | Alpha-amylase C-terminal beta-sheet domain |
XP_057765547.1 |
Pfam | PF00128 |
Alpha-amylase | Domain | 42 | 112 | 6.9e-10 | 39.4 | Alpha amylase, catalytic domain |
XP_057765547.1 |
Pfam | PF07821 |
Alpha-amyl_C2 | Domain | 354 | 409 | 6e-22 | 78.5 | Alpha-amylase C-terminal beta-sheet domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。