Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001548`

染色体: Chr05 坐标: 14181048-14188279 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001548`
名称	SmilChr05G001548
描述	uncharacterized SmilChr05G001548
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14181048 - 14188279 / `+`

ID 对照

NCBI Gene ID	`LOC130986239`
GeneID	`130986239`
locus_tag	`-`
NCBI Name	`LOC130986239`
原始查询	`SmilChr05G001548`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841484]; symbol=AT1G50620; hit=AT1G50620; species=arabidopsis; confidence=medium
产物	RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841484]; symbol=AT1G50620; hit=AT1G50620; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G50620` (AT1G50620) RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841484] identity=40.3; qcov=0.548; evalue=9.24e-91; confidence=medium
Rice	`Os06g0309000` - identity=29.8; qcov=0.953; evalue=1.88e-80; confidence=low
GO	GO:0003682 (chromatin binding)
KEGG	-
Pfam	PF00628 (PHD); PF25073 (DUF7797)
InterPro	-
eggNOG	-
NR	GeneID:130986239

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765569.1`
2	Chromosome	染色体	0.00000	`XP_057765569.1`
3	Centromere	着丝粒	0.00000	`XP_057765569.1`
4	Chromatin	染色质	0.00000	`XP_057765569.1`
5	Telomere	端粒	0.00000	`XP_057765569.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14181455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr5:14181465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr5:14181575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:14181703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C56
`Chr5:14184053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr5:14184098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,C10,C3
`Chr5:14184741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,B68,C48
`Chr5:14184752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,B68,C48
`Chr5:14185132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr5:14185162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:14185246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B33,C48
`Chr5:14185286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765569.1

801 aa

400

801

DUF7797

PHD

PF25073 DUF7797 41-93 aa PF00628 PHD 378-424 aa

XP_057765571.1

801 aa

400

801

DUF7797

PHD

PF25073 DUF7797 41-93 aa PF00628 PHD 378-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765569.1`	Pfam	`PF25073`	DUF7797	Domain	41	93	1.9e-24	85.8	Domain of unknown function (DUF7797)
`XP_057765569.1`	Pfam	`PF00628`	PHD	Domain	378	424	7.1e-08	33.1	PHD-finger
`XP_057765571.1`	Pfam	`PF25073`	DUF7797	Domain	41	93	1.9e-24	85.8	Domain of unknown function (DUF7797)
`XP_057765571.1`	Pfam	`PF00628`	PHD	Domain	378	424	7.1e-08	33.1	PHD-finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909586.1
TTGGAAAAAGGGGAATAAAAAAAGAAAAAGAAAATCCGAAATCGGTGTGTCTCTCTCTCCTGGCGCTCTCTCTCTCTGCCCTGCTCAAGTTTTTTTGCTGGCCACGCCCCCCAAGCCCCCCTACTCTCACTTACATACGATTTGATTTACTCACCACTCAAAGCTCCTCTGCCTCTACAATTACCCGCCAAAAGGTTTGACCGGATTCTTGCCTCCATTATACGCGCCTTTCGATGTGACTGCTCTTTCTGCCTTCTGTT...

XM_057909588.1
GAAAAAGGGGAATAAAAAAAGAAAAAGAAAATCCGAAATCGGTGTGTCTCTCTCTCCTGGCGCTCTCTCTCTCTGCCCTGCTCAAGTTTTTTTGCTGGCCACGCCCCCCAAGCCCCCCTACTCTCACTTACATACGATTTGATTTACTCACCACTCAAAGCTCCTCTGCCTCTACAATTACCCGCCAAAAGGTTTATTTTTAAGTTTTTAACGATTCCTAATTTCATCTTTCCCCCCTCTTTGCTTTTCTTTTTCCCTCT...

CDS

2 records

下载 CDS FASTA

LOC130986239
ATGGAATTAGCGGTTGACACTCCCGAGGCGAGATCGGAACCTGTCGGTGACAAGAGGGCGGCGGACGAGCTGGATGTCTTCAAGGATGCCTCGCCGCCGCCGCCGAAGAGGACCAGAGGATTGAGCGACCGACGCTTGGTTGGGGATGTTCGGAAGGTAGCTGAGATGGTGTTGGTGTTGGCCGCCATGGGGAAAATGCGCGGAGGGAAGGGCCCCAGTGATGTTGAGAAGGAACTCATGGCGGAGGCGCGGAACAAGTT...

Protein

2 records

下载 Protein FASTA

XP_057765569.1
MELAVDTPEARSEPVGDKRAADELDVFKDASPPPPKRTRGLSDRRLVGDVRKVAEMVLVLAAMGKMRGGKGPSDVEKELMAEARNKLAQVCEGFAPKDVFPGDSFGVVIEDLGLNRLKEQRLGFRPPKMSIAEKLLVSKRKMEKAENFSLPSTPHSSRLHPSSGSAAESRNTAHPIRMPQSDKSSHMPISSGSFLPPSSLVHTTAVNSAPLPYQLPTSEIRPVVSSGLLPSHLNSAALPRVDRSHIRSDARPNGSAHPQQ...

XP_057765571.1
MELAVDTPEARSEPVGDKRAADELDVFKDASPPPPKRTRGLSDRRLVGDVRKVAEMVLVLAAMGKMRGGKGPSDVEKELMAEARNKLAQVCEGFAPKDVFPGDSFGVVIEDLGLNRLKEQRLGFRPPKMSIAEKLLVSKRKMEKAENFSLPSTPHSSRLHPSSGSAAESRNTAHPIRMPQSDKSSHMPISSGSFLPPSSLVHTTAVNSAPLPYQLPTSEIRPVVSSGLLPSHLNSAALPRVDRSHIRSDARPNGSAHPQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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