当前解析结果
SmilChr05G001554| 统一新 Gene ID | SmilChr05G001554 |
|---|---|
| 名称 | SmilChr05G001554 |
| 描述 | 65-kDa microtubule-associated protein 1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14264408 - 14270176 / - |
| NCBI Gene ID | LOC130986243 |
|---|---|
| GeneID | 130986243 |
| locus_tag | - |
| NCBI Name | LOC130986243 |
| 原始查询 | SmilChr05G001554 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 65-kDa microtubule-associated protein 1 |
| 产物 | 65-kDa microtubule-associated protein 1 |
| Arabidopsis | AT5G55230 (MAP65-1)microtubule-associated proteins 65-1 [Source:NCBI gene (formerly Entrezgene);Acc:835616] identity=74.4; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0308300- identity=69.1; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0000911 (cytokinesis by cell plate formation); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF03999 (MAP65_ASE1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986243 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057765575.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057765575.1 |
| 3 | Phragmoplast | Phragmoplast | 0.60000 | XP_057765575.1 |
| 4 | Spindle pole | Spindle pole | 0.40000 | XP_057765575.1 |
| 5 | Nucleus | 细胞核 | 0.20000 | XP_057765575.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14264713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr5:14264719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr5:14264739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B35,B47,C3,C71 |
Chr5:14264879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr5:14265121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C23 |
Chr5:14265156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr5:14265166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:14265211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr5:14266545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:14266588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr5:14267470 |
A |
AT |
1bp_insertion | frameshift_variant | 138 | A1,A10,A14,A15,A2,A23,A25,A5,A7,A9,B1,B10,B101,B102,B103,B105,B106,B108,B109,B11,B111,B112,B113,B114,B115,B118,B119,B12,B120,B123,B127,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B18,B2,B22,B26,B27,B3,B30,B31,B32,B35,B39,B40,B48,B49,B5,B50,B51,B52,B56,B58,B59,B6,B63,B66,B67,B68,B70,B72,B73,B74,B75,B76,B77,B79,B81,B86,B88,B89,B94,B95,B97,C1,C10,C11,C12,C13,C16,C17,C18,C19,C2,C23,C26,C27,C3,C31,C32,C35,C36,C37,C41,C43,C44,C45,C47,C48,C49,C5,C51,C52,C55,C57,C60,C62,C64,C65,C66,C67,C7,C70,C72,C76,C77,C78,C79,C8,C84,C85,C86,C87,C9,D10,D11,D2,D3,D6,D8 |
Chr5:14267474 |
TC |
T |
1bp_deletion | frameshift_variant | 138 | A1,A10,A14,A15,A2,A23,A25,A5,A7,A9,B1,B10,B101,B102,B103,B105,B106,B108,B109,B11,B111,B112,B113,B114,B115,B118,B119,B12,B120,B123,B127,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B18,B2,B22,B26,B27,B3,B30,B31,B32,B35,B39,B40,B48,B49,B5,B50,B51,B52,B56,B58,B59,B6,B63,B66,B67,B68,B70,B72,B73,B74,B75,B76,B77,B79,B81,B86,B88,B89,B94,B95,B97,C1,C10,C11,C12,C13,C16,C17,C18,C19,C2,C23,C26,C27,C3,C31,C32,C35,C36,C37,C41,C43,C44,C45,C47,C48,C49,C5,C51,C52,C55,C57,C60,C62,C64,C65,C66,C67,C7,C70,C72,C76,C77,C78,C79,C8,C84,C85,C86,C87,C9,D10,D11,D2,D3,D6,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765575.1PF03999
MAP65_ASE1 18-502 aa
XP_057765576.1PF03999
MAP65_ASE1 18-502 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765575.1 |
Pfam | PF03999 |
MAP65_ASE1 | Family | 18 | 502 | 2.5e-79 | 267.9 | Microtubule associated protein (MAP65/ASE1 family) |
XP_057765576.1 |
Pfam | PF03999 |
MAP65_ASE1 | Family | 18 | 502 | 2.5e-79 | 267.9 | Microtubule associated protein (MAP65/ASE1 family) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。