Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001554

染色体: Chr05 坐标: 14264408-14270176 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001554
名称SmilChr05G001554
描述65-kDa microtubule-associated protein 1
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向14264408 - 14270176 / -

ID 对照

NCBI Gene IDLOC130986243
GeneID130986243
locus_tag-
NCBI NameLOC130986243
原始查询SmilChr05G001554

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述65-kDa microtubule-associated protein 1
产物65-kDa microtubule-associated protein 1
ArabidopsisAT5G55230 (MAP65-1)
microtubule-associated proteins 65-1 [Source:NCBI gene (formerly Entrezgene);Acc:835616]
identity=74.4; qcov=1.02; evalue=0; confidence=high
RiceOs06g0308300
-
identity=69.1; qcov=0.986; evalue=0; confidence=high
GOGO:0000226 (microtubule cytoskeleton organization); GO:0000911 (cytokinesis by cell plate formation); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding)
KEGG-
PfamPF03999 (MAP65_ASE1)
InterPro-
eggNOG-
NRGeneID:130986243

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057765575.1
2 Cytoskeleton 细胞骨架 0.80000 XP_057765575.1
3 Phragmoplast Phragmoplast 0.60000 XP_057765575.1
4 Spindle pole Spindle pole 0.40000 XP_057765575.1
5 Nucleus 细胞核 0.20000 XP_057765575.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:14264713 G A EMS_canonical_SNV CDS_variant 1 A16
Chr5:14264719 G A EMS_canonical_SNV CDS_variant 1 A7
Chr5:14264739 G A EMS_canonical_SNV CDS_variant 5 A15,B35,B47,C3,C71
Chr5:14264879 G A EMS_canonical_SNV CDS_variant 1 C40
Chr5:14265121 G A EMS_canonical_SNV CDS_variant 2 B78,C23
Chr5:14265156 G A EMS_canonical_SNV CDS_variant 1 B53
Chr5:14265166 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:14265211 G A EMS_canonical_SNV CDS_variant 1 C10
Chr5:14266545 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:14266588 C T EMS_canonical_SNV CDS_variant 1 C40
Chr5:14267470 A AT 1bp_insertion frameshift_variant 138 A1,A10,A14,A15,A2,A23,A25,A5,A7,A9,B1,B10,B101,B102,B103,B105,B106,B108,B109,B11,B111,B112,B113,B114,B115,B118,B119,B12,B120,B123,B127,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B18,B2,B22,B26,B27,B3,B30,B31,B32,B35,B39,B40,B48,B49,B5,B50,B51,B52,B56,B58,B59,B6,B63,B66,B67,B68,B70,B72,B73,B74,B75,B76,B77,B79,B81,B86,B88,B89,B94,B95,B97,C1,C10,C11,C12,C13,C16,C17,C18,C19,C2,C23,C26,C27,C3,C31,C32,C35,C36,C37,C41,C43,C44,C45,C47,C48,C49,C5,C51,C52,C55,C57,C60,C62,C64,C65,C66,C67,C7,C70,C72,C76,C77,C78,C79,C8,C84,C85,C86,C87,C9,D10,D11,D2,D3,D6,D8
Chr5:14267474 TC T 1bp_deletion frameshift_variant 138 A1,A10,A14,A15,A2,A23,A25,A5,A7,A9,B1,B10,B101,B102,B103,B105,B106,B108,B109,B11,B111,B112,B113,B114,B115,B118,B119,B12,B120,B123,B127,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B18,B2,B22,B26,B27,B3,B30,B31,B32,B35,B39,B40,B48,B49,B5,B50,B51,B52,B56,B58,B59,B6,B63,B66,B67,B68,B70,B72,B73,B74,B75,B76,B77,B79,B81,B86,B88,B89,B94,B95,B97,C1,C10,C11,C12,C13,C16,C17,C18,C19,C2,C23,C26,C27,C3,C31,C32,C35,C36,C37,C41,C43,C44,C45,C47,C48,C49,C5,C51,C52,C55,C57,C60,C62,C64,C65,C66,C67,C7,C70,C72,C76,C77,C78,C79,C8,C84,C85,C86,C87,C9,D10,D11,D2,D3,D6,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765575.1
580 aa
N
1
290
580
MAP65_ASE1
C
PF03999 MAP65_ASE1 18-502 aa
XP_057765576.1
580 aa
N
1
290
580
MAP65_ASE1
C
PF03999 MAP65_ASE1 18-502 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765575.1 Pfam PF03999 MAP65_ASE1 Family 18 502 2.5e-79 267.9 Microtubule associated protein (MAP65/ASE1 family)
XP_057765576.1 Pfam PF03999 MAP65_ASE1 Family 18 502 2.5e-79 267.9 Microtubule associated protein (MAP65/ASE1 family)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909592.1
TATTTGCCCAAATACGACAGCGTATTGTCCACTTCTCAATATTTATCTCCTTTGCTCACTTCACTCTTACTCCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCATCACTCAAGCAACCATCGAAGTACATTAGATCTGAACCTACATACCCCGCAACCCGACCCGTCTAGCACGATCTGGGTTCCTTTGAACTACCGTGGAATGGAATCCATAGAAGCTGAGAAGCCTCTTAGCAGACAAAATACGTGCGGATCTT...
XM_057909593.1
GTTCAGAATGCTTGTGTTGTACTGTTGCCACAACTGGTTGCTTTGAGTTATATCTCGATTACATCGACAATGCTTTTGTAAAGAGATCCACTGGCTTCCAAGTTCACTTTACCGGCTGTGTGTGTGTTAAATGGGAGTGTTTAGTTCTTCTGGATTTAATGCGCATTTTTATGGATTGTTTATCTATTTATACTCTGTTCTTCAAGAGTCCCCTTTCTGGTCTAATTCTCTTTCGGCGCTTCAAAACAGCGGAATGCTAC...

CDS

2 records

下载 CDS FASTA
LOC130986243
ATGGAATCCATAGAAGCTGAGAAGCCTCTTAGCAGACAAAATACGTGCGGATCTTTGCTGCAGCAACTGCAGCAAATTTGGGATGAAGTTGGTGAAAGTGATGAAGAACGAGACAAAATTCTTCTTCAATTGGATCAGGAGTGCTTGGATGTATACAAGAGAAAAGTTGACCTGGCCGTGAAATCTAGAGCACACCTTCTTCAGACATTGGCAGATGCTAGAGTTGAACTCACCAATCTCTTATCAGCGTTTGGTGAAAA...
LOC130986243
ATGGAATCCATAGAAGCTGAGAAGCCTCTTAGCAGACAAAATACGTGCGGATCTTTGCTGCAGCAACTGCAGCAAATTTGGGATGAAGTTGGTGAAAGTGATGAAGAACGAGACAAAATTCTTCTTCAATTGGATCAGGAGTGCTTGGATGTATACAAGAGAAAAGTTGACCTGGCCGTGAAATCTAGAGCACACCTTCTTCAGACATTGGCAGATGCTAGAGTTGAACTCACCAATCTCTTATCAGCGTTTGGTGAAAA...

Protein

2 records

下载 Protein FASTA
XP_057765575.1
MESIEAEKPLSRQNTCGSLLQQLQQIWDEVGESDEERDKILLQLDQECLDVYKRKVDLAVKSRAHLLQTLADARVELTNLLSAFGEKTYVGIPERTSGTIKEQLEAIAPALEKLWEQKDEKIKEFSDVQSQIQKISAEISGTSDQVDNLTVDESDLSLKKLDEFHAQLQDLQKEKSDRLHKVLEFVSTVHDLCAVLGMDFFTTVTEVHPSLNDATGVQSKSISNDTLAGLAKTVLALKEDKKQRLQKLQELATQLIDLWN...
XP_057765576.1
MESIEAEKPLSRQNTCGSLLQQLQQIWDEVGESDEERDKILLQLDQECLDVYKRKVDLAVKSRAHLLQTLADARVELTNLLSAFGEKTYVGIPERTSGTIKEQLEAIAPALEKLWEQKDEKIKEFSDVQSQIQKISAEISGTSDQVDNLTVDESDLSLKKLDEFHAQLQDLQKEKSDRLHKVLEFVSTVHDLCAVLGMDFFTTVTEVHPSLNDATGVQSKSISNDTLAGLAKTVLALKEDKKQRLQKLQELATQLIDLWN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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