当前解析结果
SmilChr05G001556| 统一新 Gene ID | SmilChr05G001556 |
|---|---|
| 名称 | SmilChr05G001556 |
| 描述 | trigger factor-like protein TIG, Chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14279690 - 14285518 / - |
| NCBI Gene ID | LOC130986244 |
|---|---|
| GeneID | 130986244 |
| locus_tag | - |
| NCBI Name | LOC130986244 |
| 原始查询 | SmilChr05G001556 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | trigger factor-like protein TIG, Chloroplastic |
| 产物 | trigger factor-like protein TIG%2C Chloroplastic |
| Arabidopsis | AT5G55220 (AT5G55220)trigger factor type chaperone family protein [Source:NCBI gene (formerly Entrezgene);Acc:835615] identity=65.4; qcov=0.889; evalue=0; confidence=high |
| Rice | Os06g0308000 (OsTIG)- identity=61.4; qcov=0.845; evalue=0; confidence=high |
| GO | GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0015031 (protein transport); GO:0043022 (ribosome binding); GO:0043335 (protein unfolding); GO:0044183 (protein folding chaperone); GO:0051083 ('de novo' cotranslational protein folding); GO:0061077 (GO:0061077) |
| KEGG | - |
| Pfam | PF05697 (Trigger_N); PF05698 (Trigger_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986244 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057765577.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057765577.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765577.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765577.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765577.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14279917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,B71 |
Chr5:14280095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B75,C61 |
Chr5:14280817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,D10 |
Chr5:14283854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765577.1PF05697
Trigger_N 82-222 aa
PF05698
Trigger_C 362-521 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765577.1 |
Pfam | PF05697 |
Trigger_N | Family | 82 | 222 | 2.5e-20 | 74.0 | Bacterial trigger factor protein (TF) |
XP_057765577.1 |
Pfam | PF05698 |
Trigger_C | Family | 362 | 521 | 2e-21 | 77.5 | Bacterial trigger factor protein (TF) C-terminus |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。