当前解析结果
SmilChr05G001569| 统一新 Gene ID | SmilChr05G001569 |
|---|---|
| 名称 | SmilChr05G001569 |
| 描述 | EH domain-containing protein 1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14338805 - 14344846 / - |
| NCBI Gene ID | LOC130986254 |
|---|---|
| GeneID | 130986254 |
| locus_tag | - |
| NCBI Name | LOC130986254 |
| 原始查询 | SmilChr05G001569 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | EH domain-containing protein 1-like |
| 产物 | EH domain-containing protein 1-like |
| Arabidopsis | AT3G20290 (EHD1)EPS15 homology domain 1 [Source:NCBI gene (formerly Entrezgene);Acc:821573] identity=76.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0687800- identity=77.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005509 (calcium ion binding); GO:0005515 (protein binding); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006897 (endocytosis); GO:0016197 (endosomal transport); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00350 (Dynamin_N); PF01926 (MMR_HSR1); PF12763 (EH); PF16880 (EHD_N); PF18150 (DUF5600) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986254 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasmic vesicle | 细胞质囊泡 | 0.80000 | XP_057765591.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057765591.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765591.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765591.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765591.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14339077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,C61 |
Chr5:14339205 |
C |
CG |
1bp_insertion | CDS_variant | 2 | B131,C40 |
Chr5:14339309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B15,B69,B83,B95,C71 |
Chr5:14339347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B15,B69,B83,B95,C71 |
Chr5:14339528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr5:14340334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C56 |
Chr5:14340606 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B130 |
Chr5:14340606 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B130 |
Chr5:14340631 |
CT |
C |
1bp_deletion | frameshift_variant | 39 | A1,A5,B10,B100,B101,B108,B110,B119,B12,B128,B130,B134,B137,B19,B26,B27,B28,B31,B53,B57,B69,B7,B70,B73,B84,B9,B90,B92,C10,C35,C48,C57,C72,C74,C83,C84,D1,D7,D8 |
Chr5:14340633 |
T |
TC |
1bp_insertion | frameshift_variant | 29 | A1,A5,B10,B101,B108,B119,B12,B130,B137,B19,B26,B27,B28,B31,B53,B57,B69,B70,B84,B9,B90,B92,C10,C35,C72,C83,C84,D1,D7 |
Chr5:14342241 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr5:14342241 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765591.1PF12763
EH 14-88 aa
PF16880
EHD_N 161-193 aa
PF01926
MMR_HSR1 198-357 aa
PF00350
Dynamin_N 198-358 aa
PF18150
DUF5600 436-540 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765591.1 |
Pfam | PF12763 |
EH | Domain | 14 | 88 | 1.9e-11 | 44.5 | EH domain |
XP_057765591.1 |
Pfam | PF16880 |
EHD_N | Family | 161 | 193 | 2.9e-13 | 50.2 | N-terminal EH-domain containing protein |
XP_057765591.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 198 | 357 | 8.2e-08 | 33.1 | 50S ribosome-binding GTPase |
XP_057765591.1 |
Pfam | PF00350 |
Dynamin_N | Domain | 198 | 358 | 1.8e-14 | 54.8 | Dynamin family |
XP_057765591.1 |
Pfam | PF18150 |
DUF5600 | Domain | 436 | 540 | 5.8e-28 | 98.4 | Domain of unknown function (DUF5600) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。