Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001589`

染色体: Chr05 坐标: 14585567-14590529 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001589`
名称	SmilChr05G001589
描述	ribonuclease 3-like protein 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14585567 - 14590529 / `-`

ID 对照

NCBI Gene ID	`LOC130986270`
GeneID	`130986270`
locus_tag	`-`
NCBI Name	`LOC130986270`
原始查询	`SmilChr05G001589`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribonuclease 3-like protein 2
产物	ribonuclease 3-like protein 2
Arabidopsis	`AT3G20420` (RTL2) RNAse THREE-like protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:821587] identity=49; qcov=1; evalue=2.8e-114; confidence=high
Rice	`Os05g0271300` - identity=49; qcov=0.822; evalue=2.07e-84; confidence=high
GO	GO:0003723 (RNA binding); GO:0004525 (ribonuclease III activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030422 (siRNA processing)
KEGG	-
Pfam	PF00035 (dsrm); PF00636 (Ribonuclease_3); PF14622 (Ribonucleas_3_3); PF14709 (DND1_DSRM)
InterPro	-
eggNOG	-
NR	GeneID:130986270

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057765605.1`
2	Cytoplasm	细胞质	0.80000	`XP_057765605.1`
3	Cytosol	细胞质基质	0.80000	`XP_057765605.1`
4	Chromosome	染色体	0.00000	`XP_057765605.1`
5	Centromere	着丝粒	0.00000	`XP_057765605.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14585756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B112
`Chr5:14586700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B66,B75,B94,D5
`Chr5:14586778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:14586831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:14587373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr5:14589534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,B79,D6
`Chr5:14589571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B79,D6
`Chr5:14589610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B79,D6
`Chr5:14589946`	`CA`	`C`	1bp_deletion	frameshift_variant	64	A14,A21,A23,A7,A9,B108,B111,B112,B117,B118,B123,B129,B133,B134,B135,B136,B140,B19,B22,B28,B4,B41,B46,B49,B51,B53,B58,B75,B79,B81,B84,B87,B88,C1,C13,C16,C19,C22,C23,C25,C27,C28,C33,C39,C41,C44,C46,C5,C61,C64,C66,C67,C7,C74,C78,C79,C8,C81,C85,D11,D2,D6,D8,D9
`Chr5:14590002`	`A`	`AAC`	2bp_insertion	frameshift_variant	6	B16,B66,B94,B99,C35,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765605.1

420 aa

210

420

Ribonucleas_3_3

Ribonuclease_3

dsrm

DND1_DSRM

dsrm

PF14622 Ribonucleas_3_3 102-232 aa PF00636 Ribonuclease_3 121-229 aa PF00035 dsrm 259-319 aa PF14709 DND1_DSRM 343-415 aa PF00035 dsrm 344-411 aa

XP_057765606.1

353 aa

176

353

Ribonucleas_3_3

Ribonuclease_3

dsrm

DND1_DSRM

dsrm

PF14622 Ribonucleas_3_3 35-165 aa PF00636 Ribonuclease_3 54-162 aa PF00035 dsrm 192-252 aa PF14709 DND1_DSRM 276-348 aa PF00035 dsrm 277-344 aa

XP_057765607.1

353 aa

176

353

Ribonucleas_3_3

Ribonuclease_3

dsrm

DND1_DSRM

dsrm

PF14622 Ribonucleas_3_3 35-165 aa PF00636 Ribonuclease_3 54-162 aa PF00035 dsrm 192-252 aa PF14709 DND1_DSRM 276-348 aa PF00035 dsrm 277-344 aa

XP_057765608.1

353 aa

176

353

Ribonucleas_3_3

Ribonuclease_3

dsrm

DND1_DSRM

dsrm

PF14622 Ribonucleas_3_3 35-165 aa PF00636 Ribonuclease_3 54-162 aa PF00035 dsrm 192-252 aa PF14709 DND1_DSRM 276-348 aa PF00035 dsrm 277-344 aa

XP_057765609.1

353 aa

176

353

Ribonucleas_3_3

Ribonuclease_3

dsrm

DND1_DSRM

dsrm

PF14622 Ribonucleas_3_3 35-165 aa PF00636 Ribonuclease_3 54-162 aa PF00035 dsrm 192-252 aa PF14709 DND1_DSRM 276-348 aa PF00035 dsrm 277-344 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765605.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	102	232	1e-17	65.2	Ribonuclease-III-like
`XP_057765605.1`	Pfam	`PF00636`	Ribonuclease_3	Family	121	229	5e-21	76.1	Ribonuclease III domain
`XP_057765605.1`	Pfam	`PF00035`	dsrm	Domain	259	319	1.3e-18	68.0	Double-stranded RNA binding motif
`XP_057765605.1`	Pfam	`PF14709`	DND1_DSRM	Domain	343	415	1e-12	48.9	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057765605.1`	Pfam	`PF00035`	dsrm	Domain	344	411	1.3e-18	68.0	Double-stranded RNA binding motif
`XP_057765606.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	35	165	5.7e-18	66.0	Ribonuclease-III-like
`XP_057765606.1`	Pfam	`PF00636`	Ribonuclease_3	Family	54	162	3.6e-21	76.5	Ribonuclease III domain
`XP_057765606.1`	Pfam	`PF00035`	dsrm	Domain	192	252	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765606.1`	Pfam	`PF14709`	DND1_DSRM	Domain	276	348	7e-13	49.4	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057765606.1`	Pfam	`PF00035`	dsrm	Domain	277	344	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765607.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	35	165	5.7e-18	66.0	Ribonuclease-III-like
`XP_057765607.1`	Pfam	`PF00636`	Ribonuclease_3	Family	54	162	3.6e-21	76.5	Ribonuclease III domain
`XP_057765607.1`	Pfam	`PF00035`	dsrm	Domain	192	252	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765607.1`	Pfam	`PF14709`	DND1_DSRM	Domain	276	348	7e-13	49.4	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057765607.1`	Pfam	`PF00035`	dsrm	Domain	277	344	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765608.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	35	165	5.7e-18	66.0	Ribonuclease-III-like
`XP_057765608.1`	Pfam	`PF00636`	Ribonuclease_3	Family	54	162	3.6e-21	76.5	Ribonuclease III domain
`XP_057765608.1`	Pfam	`PF00035`	dsrm	Domain	192	252	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765608.1`	Pfam	`PF14709`	DND1_DSRM	Domain	276	348	7e-13	49.4	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057765608.1`	Pfam	`PF00035`	dsrm	Domain	277	344	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765609.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	35	165	5.7e-18	66.0	Ribonuclease-III-like
`XP_057765609.1`	Pfam	`PF00636`	Ribonuclease_3	Family	54	162	3.6e-21	76.5	Ribonuclease III domain
`XP_057765609.1`	Pfam	`PF00035`	dsrm	Domain	192	252	7.8e-19	68.7	Double-stranded RNA binding motif
`XP_057765609.1`	Pfam	`PF14709`	DND1_DSRM	Domain	276	348	7e-13	49.4	double strand RNA binding domain from DEAD END PROTEIN 1
`XP_057765609.1`	Pfam	`PF00035`	dsrm	Domain	277	344	7.8e-19	68.7	Double-stranded RNA binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057909626.1
CAACATTGTGTGTTCAGTATAGACTATAGAGGGTTTTGAGTTGAGCACAGAAATACAGCCGCACGCACGCGCGCGACCTGAAAACAGCACCGCTCCAGAACCGCCGTACCACCTCTCCTAAGTCACCGCCATTCCGTCCCTTGCTGCTCGCCGACGTGGACAGCTCGACTGATCGAGCAACCAGAAGTCGCGCCTGCGTTACCCCCTCCTTCGTCCGTCGCCGGCAGGCCAACGATTTTAGCATTGTTCTTGCTCTTACG...

XM_057909625.1
CAACATTGTGTGTTCAGTATAGACTATAGAGGGTTTTGAGTTGAGCACAGAAATACAGCCGCACGCACGCGCGCGACCTGAAAACAGCACCGCTCCAGAACCGCCGTACCACCTCTCCTAAGTCACCGCCATTCCGTCCCTTGCTGCTCGCCGACGTGGACAGCTCGACTGATCGAGCAACCAGAAGTCGCGCCTGCGTTACCCCCTCCTTCGTCCGTCGCCGGCAGGCCAACGATTTTACCTCGTCTTAAGGCATTGTT...

CDS

5 records

下载 CDS FASTA

LOC130986270
ATGGTGGAAGGAACAGATTATCTTCGAATTTACTTACTTTTATATAGCTGTAAAAGAAATGGATTATCTGTTAATTCATGTTTCTTTTTTCTTCTAATTATTGTAAATGATTTGTTTCTGAAAACCAATGTTCAAAATTTTGATTTTCTGAAACTGAAGCCTCGTCTTAAGGCATTGTTCTTGCTCTTACGCACCACCGAGATGGAGGCAATCGGATACTCGTGCGATGAGGTTGAAGAAATATCGGACATGGAGGCGTC...

LOC130986270
ATGGAGGCAATCGGATACTCGTGCGATGAGGTTGAAGAAATATCGGACATGGAGGCGTCGGTGGGGGCGGTGGAGAATCTCCTCGGGTATCGTTTCAAGCAGAAGAAGCTTCTGGAAGAGGCCTTGACTCACTCCTCCTGCGCCGAGTCCACCTCCTACCAGCGCCTCGAGTTCATCGGCGACGCCGCTCTCGGCTTGGCCATCTCCAATTTCGTCTACCTCAGCTACCCTGGCCTTGACCAAGGCAAGCTCACGCTCCT...

Protein

5 records

下载 Protein FASTA

XP_057765605.1
MVEGTDYLRIYLLLYSCKRNGLSVNSCFFFLLIIVNDLFLKTNVQNFDFLKLKPRLKALFLLLRTTEMEAIGYSCDEVEEISDMEASVGAVENLLGYRFKQKKLLEEALTHSSCAESTSYQRLEFIGDAALGLAISNFVYLSYPGLDQGKLTLLRAANICTEKLARVAVRHRLYKYVRRNVAALDDKVREFVMAVQEEEELEIHGGLVKAPKVLADIVESVAAALYVDCNFDLHTTWEIFRNLLEPIVTLDILEQQPQPV...

XP_057765606.1
MEAIGYSCDEVEEISDMEASVGAVENLLGYRFKQKKLLEEALTHSSCAESTSYQRLEFIGDAALGLAISNFVYLSYPGLDQGKLTLLRAANICTEKLARVAVRHRLYKYVRRNVAALDDKVREFVMAVQEEEELEIHGGLVKAPKVLADIVESVAAALYVDCNFDLHTTWEIFRNLLEPIVTLDILEQQPQPVTMLFESCQKDGKQVEISYGRKEEKFFATVTIDGKFLASAFSEQKENAKLLVAKAALRKLSFGSCDPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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