Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001602`

染色体: Chr05 坐标: 14780710-14786198 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001602`
名称	SmilChr05G001602
描述	chaperonin 60 subunit beta 4, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14780710 - 14786198 / `+`

ID 对照

NCBI Gene ID	`LOC130986283`
GeneID	`130986283`
locus_tag	`-`
NCBI Name	`LOC130986283`
原始查询	`SmilChr05G001602`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperonin 60 subunit beta 4, chloroplastic-like
产物	chaperonin 60 subunit beta 4%2C chloroplastic-like
Arabidopsis	`AT1G26230` (Cpn60beta4) TCP-1/cpn60 chaperonin family protein [Source:NCBI gene (formerly Entrezgene);Acc:839164] identity=72.9; qcov=0.948; evalue=0; confidence=high
Rice	`Os04g0443900` - identity=65.7; qcov=0.99; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0009570 (chloroplast stroma); GO:0042026 (protein refolding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00118 (Cpn60_TCP1)
InterPro	-
eggNOG	-
NR	GeneID:130986283

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765630.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057765630.1`
3	Mitochondrion	线粒体	0.20000	`XP_057765632.1`
4	Nucleus	细胞核	0.00000	`XP_057765630.1`
5	Chromosome	染色体	0.00000	`XP_057765630.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14781743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B55,D9
`Chr5:14782625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,C62
`Chr5:14782886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:14782997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B101,B128,B70
`Chr5:14783205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A2,A7
`Chr5:14783277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B101,B128,B70
`Chr5:14783284`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B78
`Chr5:14783284`	`GA`	`G`	1bp_deletion	CDS_variant	1	B78
`Chr5:14783289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr5:14783292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B101,B128,B70
`Chr5:14783468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B101,B128,B70
`Chr5:14783507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B118,B128,B70,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765630.1

593 aa

296

593

Cpn60_TCP1

PF00118 Cpn60_TCP1 59-561 aa

XP_057765631.1

593 aa

296

593

Cpn60_TCP1

PF00118 Cpn60_TCP1 59-561 aa

XP_057765632.1

592 aa

296

592

Cpn60_TCP1

PF00118 Cpn60_TCP1 59-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765630.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	59	561	5.1e-83	280.1	TCP-1/cpn60 chaperonin family
`XP_057765631.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	59	561	5.1e-83	280.1	TCP-1/cpn60 chaperonin family
`XP_057765632.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	59	561	5.1e-83	280.1	TCP-1/cpn60 chaperonin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909647.1
GCACTGTTATTGCATCAACAAAATTGGGCGGGGAAAAAGACAACAAAATTCGTCTATGCTTGTTCCTGTTCTCAGTGGTTCATTCCACTATTGCATTCTCCATGAATGGATCAAACCCTCAAAAATCTTCAATTTTGGGAATTATCATCACGCCCTGCTAGTGGATCAGACGACAGAAGAAGAAAACAGGCGGCGGCGACATAGATTGGTAAAGACCATATTAGAAGAAAGATGAAAGGGAGGCGGAGAAGAAAAAAGGC...

XM_057909648.1
TTTGCTATCAGAGTCGATTTGGAAGAAATTTAATTTCATGGTAAAATTAAGATAAATCGAAAGTTTGTGTCTTTACAATCTAATACTACTATCTCTTTGTAAATTTGTATTATATTCTGATTATACCCCTCAATTTTCTTCTGAATAACGCCAAAAGCCCATTACCATCCATCAAGAAAGATATTATCTATCTCAAATTTTTCTTATCCCTCTGCAACTATCTGGACTGCAAATAAACACCCTTTTGAGGCAGAAGCCAT...

CDS

3 records

下载 CDS FASTA

LOC130986283
ATGGGTTGTTCATTCAAGCCATTGCCTGCAGCCTTCACCAACCAACCAATGCCCACTAAAATTACCAAGAAACATTCAATTTGCTGTTCGTTGAGTGCAAAACCTGCAGCAAAGGATTTGTACTTCAACCATGATGGTTCTGCCACTAAAAAACTATTGGCAGGGGTTAATAAGGTTGCAGAGCTGATTGGAGTGACAATGGGGCCTAAAGGGAGGAATGTGGTGTTGCAGAACAAGTATGGACCACCCAAGATTGTCAA...

Protein

3 records

下载 Protein FASTA

XP_057765630.1
MGCSFKPLPAAFTNQPMPTKITKKHSICCSLSAKPAAKDLYFNHDGSATKKLLAGVNKVAELIGVTMGPKGRNVVLQNKYGPPKIVNDGETVLKQIELDDPLENVGVKLVRQAGARTNDLAGDGCTTSIVLARGLIAEGVKVIAAGLNPVQVSRGIEKTARALVSELKLMSKEVEDHELAHVAAVSAGNDYAVGDMIADALQQVGREGVVTIEKGNYAENKLVIVEGMQFDRGYMSPYFVTDRQKRTVEFHDCKLLLVDK...

XP_057765631.1
MGCSFKPLPAAFTNQPMPTKITKKHSICCSLSAKPAAKDLYFNHDGSATKKLLAGVNKVAELIGVTMGPKGRNVVLQNKYGPPKIVNDGETVLKQIELDDPLENVGVKLVRQAGARTNDLAGDGCTTSIVLARGLIAEGVKVIAAGLNPVQVSRGIEKTARALVSELKLMSKEVEDHELAHVAAVSAGNDYAVGDMIADALQQVGREGVVTIEKGNYAENKLVIVEGMQFDRGYMSPYFVTDRQKRTVEFHDCKLLLVDK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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