当前解析结果
SmilChr05G001613| 统一新 Gene ID | SmilChr05G001613 |
|---|---|
| 名称 | SmilChr05G001613 |
| 描述 | protein NSP-INTERACTING KINASE 2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14852260 - 14855718 / - |
| NCBI Gene ID | LOC130986293 |
|---|---|
| GeneID | 130986293 |
| locus_tag | - |
| NCBI Name | LOC130986293 |
| 原始查询 | SmilChr05G001613 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NSP-INTERACTING KINASE 2 |
| 产物 | protein NSP-INTERACTING KINASE 2 |
| Arabidopsis | AT3G25560 (NIK2)NSP-interacting kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:822143] identity=75.2; qcov=0.985; evalue=0; confidence=high |
| Rice | Os06g0274500 (OsSERL2)- identity=66.3; qcov=1; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986293 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765643.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765643.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765643.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765643.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765643.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14852642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:14852729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B28,B74 |
Chr5:14853537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:14853868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:14853893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A2,A7 |
Chr5:14854448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765643.1PF08263
LRRNT_2 27-64 aa
PF23598
LRR_14 84-171 aa
PF00560
LRR_1 92-114 aa
PF00560
LRR_1 116-138 aa
PF13855
LRR_8 134-175 aa
PF00560
LRR_1 141-162 aa
PF00560
LRR_1 164-182 aa
PF00069
Pkinase 294-559 aa
PF07714
PK_Tyr_Ser-Thr 296-562 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765643.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 27 | 64 | 2.5e-10 | 41.1 | Leucine rich repeat N-terminal domain |
XP_057765643.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 84 | 171 | 6.2e-11 | 42.4 | Leucine-rich repeat region |
XP_057765643.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 92 | 114 | 9.3e-14 | 49.3 | Leucine Rich Repeat |
XP_057765643.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 116 | 138 | 9.3e-14 | 49.3 | Leucine Rich Repeat |
XP_057765643.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 134 | 175 | 1.1e-12 | 48.2 | Leucine rich repeat |
XP_057765643.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 141 | 162 | 9.3e-14 | 49.3 | Leucine Rich Repeat |
XP_057765643.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 164 | 182 | 9.3e-14 | 49.3 | Leucine Rich Repeat |
XP_057765643.1 |
Pfam | PF00069 |
Pkinase | Domain | 294 | 559 | 6.2e-42 | 144.5 | Protein kinase domain |
XP_057765643.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 296 | 562 | 1.7e-42 | 146.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。