当前解析结果
SmilChr05G001630| 统一新 Gene ID | SmilChr05G001630 |
|---|---|
| 名称 | SmilChr05G001630 |
| 描述 | putative phospholipid-transporting ATPase 9 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 15213235 - 15218924 / - |
| NCBI Gene ID | LOC130986305 |
|---|---|
| GeneID | 130986305 |
| locus_tag | - |
| NCBI Name | LOC130986305 |
| 原始查询 | SmilChr05G001630 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative phospholipid-transporting ATPase 9 |
| 产物 | putative phospholipid-transporting ATPase 9 |
| Arabidopsis | AT1G68710 (AT1G68710)ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843201] identity=75; qcov=0.994; evalue=0; confidence=high |
| Rice | Os06g0565900- identity=56.4; qcov=0.549; evalue=0; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity) |
| KEGG | - |
| Pfam | PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986305 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765664.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057765664.1 |
| 3 | Endosome | 内体 | 0.40000 | XP_057765664.1 |
| 4 | Endosome membrane | 内体膜 | 0.40000 | XP_057765664.1 |
| 5 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057765664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:15213529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,D9 |
Chr5:15213559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A2,A7,B104 |
Chr5:15213619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A2,A7,B104 |
Chr5:15213900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C23 |
Chr5:15213921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:15213943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,D11 |
Chr5:15213991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr5:15214198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:15214261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,A2,A7 |
Chr5:15214443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr5:15214512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:15214714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765664.1PF16209
PhoLip_ATPase_N 40-106 aa
PF13246
Cation_ATPase 508-705 aa
PF16212
PhoLip_ATPase_C 884-1134 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765664.1 |
Pfam | PF16209 |
PhoLip_ATPase_N | Family | 40 | 106 | 2.9e-22 | 78.8 | Phospholipid-translocating ATPase N-terminal |
XP_057765664.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 508 | 705 | 1.8e-20 | 74.2 | P-type ATPase, cytoplasmic domain N |
XP_057765664.1 |
Pfam | PF16212 |
PhoLip_ATPase_C | Family | 884 | 1134 | 4.6e-89 | 299.2 | Phospholipid-translocating P-type ATPase C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。