Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001642`

染色体: Chr05 坐标: 15374415-15379375 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001642`
名称	SmilChr05G001642
描述	protein CHUP1, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	15374415 - 15379375 / `+`

ID 对照

NCBI Gene ID	`LOC130986318`
GeneID	`130986318`
locus_tag	`-`
NCBI Name	`LOC130986318`
原始查询	`SmilChr05G001642`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHUP1, chloroplastic
产物	protein CHUP1%2C chloroplastic
Arabidopsis	`AT3G25690` (CHUP1) Hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:822157] identity=69.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os12g0105300` - identity=67.1; qcov=0.933; evalue=0; confidence=high
GO	GO:0009658 (chloroplast organization); GO:0009707 (chloroplast outer membrane)
KEGG	-
Pfam	PF26700 (IPGAL1_C)
InterPro	-
eggNOG	-
NR	GeneID:130986318

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057765679.1`
2	Cytosol	细胞质基质	0.40000	`XP_057765679.1`
3	Cytoskeleton	细胞骨架	0.20000	`XP_057765681.1`
4	Nucleus	细胞核	0.00000	`XP_057765679.1`
5	Chromosome	染色体	0.00000	`XP_057765679.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:15375639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C23
`Chr5:15375872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr5:15376720`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A24
`Chr5:15376720`	`TG`	`T`	1bp_deletion	CDS_variant	1	A24
`Chr5:15377005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr5:15377162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B30,C17,C36,C84
`Chr5:15377726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C23
`Chr5:15377846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765679.1

982 aa

491

982

IPGAL1_C

PF26700 IPGAL1_C 824-976 aa

XP_057765680.1

981 aa

490

981

IPGAL1_C

PF26700 IPGAL1_C 823-975 aa

XP_057765681.1

980 aa

490

980

IPGAL1_C

PF26700 IPGAL1_C 822-974 aa

XP_057765682.1

979 aa

490

979

IPGAL1_C

PF26700 IPGAL1_C 821-973 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765679.1`	Pfam	`PF26700`	IPGAL1_C	Domain	824	976	1.3e-57	194.7	IPGAL1-like, C-terminal domain
`XP_057765680.1`	Pfam	`PF26700`	IPGAL1_C	Domain	823	975	1.3e-57	194.7	IPGAL1-like, C-terminal domain
`XP_057765681.1`	Pfam	`PF26700`	IPGAL1_C	Domain	822	974	1.3e-57	194.7	IPGAL1-like, C-terminal domain
`XP_057765682.1`	Pfam	`PF26700`	IPGAL1_C	Domain	821	973	1.3e-57	194.7	IPGAL1-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057909696.1
AAATGCAGCCAAAAAAACTTGTCAAATAATATACGCAAATTTTTGGTCTAATCTACTTTTGTTATGGATAACTAACTCTATCCATCCATCCATACGCACCAATCCACTCACACACAGCCACCAATTGAATGCCAATTTTACCTTTTTCGAAACTATTATAATCATAATGAAAACAAATCCTAGTGCTCTAAAATAAATCATTACTACAAAATTTCAAAAAAAAAAAAAAATTACTACAAAATTTCAAAGACGAAAGCAGA...

XM_057909697.1
CAGATTAATTTACGGTGTGTTGCCAGCTAGAAGAAAAAAATCCCACTGGTAGCCATTATTTATGGCAATGCAGAGAAACATTGACAAAACCTCATTATTAGTTGTAACTAACCACAATTGCTCAATGAAACTGGAGCAGGATTCAGACAAGTCGCTTAATTCTTGTCCAAGACTACCTCTTTCATTTACTGTCGTCATTTTTGAGTCCATAAATATATCTTTCTTTTTTTTATCTTCAGTTATCCGCTGGTCAGCTAGTC...

CDS

4 records

下载 CDS FASTA

LOC130986318
ATGATTGTCAGGTTAGGCTTTGTGGTTGCTGCTTCTATTGCAGCATATGCAGTTAAGCAGGTTAGTGTCAAGAACTCGAAGCCGCCGGAGAATTCAAAGAAGCGCCAAGTAGAAAATGATGAAGCACCACTTGAGAAGTCTTGGAATGAAGGGGAACAGGACAAGGAGCATGTTGTGTATTCGGACAGTGATTTCAAGGAGGTGGAAGAGGAAGAGGATAAAGAAGAGGTGAAGTTGATCAACAGCATCATAAATCCTGC...

LOC130986318
ATGATTGTCAGGTTAGGCTTTGTGGTTGCTGCTTCTATTGCAGCATATGCAGTTAAGCAGGTTAGTGTCAAGAACTCGAAGCCGCCGGAGAATTCAAAGAAGCGCCAAGTAGAAAATGATGAAGCACCACTTGAGAAGTCTTGGAATGAAGGGGAACAGGACAAGGAGCATGTTGTGTATTCGGACAGTGATTTCAAGGAGGAGGAAGAGGAAGAGGAAGAGGATAAAGAAGAGGTGAAGTTGATCAACAGCATCATAAA...

Protein

4 records

下载 Protein FASTA

XP_057765679.1
MIVRLGFVVAASIAAYAVKQVSVKNSKPPENSKKRQVENDEAPLEKSWNEGEQDKEHVVYSDSDFKEEEEEEEEDKEEVKLINSIINPALSSPPDFEDEFLPEFESLLSGEIDFPLPTDKYDTAVNIKAEKDRVYESEMANNASELERLRDLVKELEEREVKLEGELLEYYGLKEQESSIAELQKQLKIKTVEIDMLNITINSLQAERKKLQEELSQGVAARKELETARKKIKELQKQIQLEANQTKGQLLLLKQQVSGL...

XP_057765680.1
MIVRLGFVVAASIAAYAVKQVSVKNSKPPENSKKRQENDEAPLEKSWNEGEQDKEHVVYSDSDFKEEEEEEEEDKEEVKLINSIINPALSSPPDFEDEFLPEFESLLSGEIDFPLPTDKYDTAVNIKAEKDRVYESEMANNASELERLRDLVKELEEREVKLEGELLEYYGLKEQESSIAELQKQLKIKTVEIDMLNITINSLQAERKKLQEELSQGVAARKELETARKKIKELQKQIQLEANQTKGQLLLLKQQVSGLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器