Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001682`

染色体: Chr05 坐标: 15960996-15965423 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001682`
名称	SmilChr05G001682
描述	uncharacterized SmilChr05G001682
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	15960996 - 15965423 / `-`

ID 对照

NCBI Gene ID	`LOC130986331`
GeneID	`130986331`
locus_tag	`-`
NCBI Name	`LOC130986331`
原始查询	`SmilChr05G001682`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843187]; symbol=AT1G68580; hit=AT1G68580; species=arabidopsis; confidence=medium
产物	At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843187]; symbol=AT1G68580; hit=AT1G68580; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G68580` (AT1G68580) At and bromo-adjacent homology (BAH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843187] identity=44.6; qcov=0.978; evalue=7.62e-137; confidence=medium
Rice	`Os08g0431100` - identity=38.5; qcov=0.987; evalue=6.47e-118; confidence=medium
GO	GO:0003682 (chromatin binding)
KEGG	-
Pfam	PF05641 (Agenet)
InterPro	-
eggNOG	-
NR	GeneID:130986331

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765701.1`
2	Chromosome	染色体	0.00000	`XP_057765701.1`
3	Centromere	着丝粒	0.00000	`XP_057765701.1`
4	Chromatin	染色质	0.00000	`XP_057765701.1`
5	Telomere	端粒	0.00000	`XP_057765701.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:15961359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B41,C42
`Chr5:15961385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B31,C35
`Chr5:15961407`	`G`	`GA`	1bp_insertion	frameshift_variant	3	B105,B52,C54
`Chr5:15961407`	`G`	`GA`	1bp_insertion	CDS_variant	3	B105,B52,C54
`Chr5:15961409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B52,C54
`Chr5:15961421`	`TCC`	`T`	2bp_deletion	frameshift_variant	4	B75,C19,C82,C87
`Chr5:15961421`	`TCC`	`T`	2bp_deletion	CDS_variant	4	B75,C19,C82,C87
`Chr5:15961453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B52,C54
`Chr5:15961474`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A5,B11,B69,B73,D6
`Chr5:15961474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B11,B69,B73,D6
`Chr5:15961477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr5:15961520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765701.1

662 aa

331

662

Agenet

PF05641 Agenet 371-426 aa

XP_057765702.1

555 aa

278

555

Agenet

PF05641 Agenet 264-319 aa

XP_057765703.1

555 aa

278

555

Agenet

PF05641 Agenet 264-319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765701.1`	Pfam	`PF05641`	Agenet	Domain	371	426	3.4e-20	73.0	Agenet domain
`XP_057765702.1`	Pfam	`PF05641`	Agenet	Domain	264	319	2.4e-20	73.5	Agenet domain
`XP_057765703.1`	Pfam	`PF05641`	Agenet	Domain	264	319	2.4e-20	73.5	Agenet domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909718.1
TTCAATTTTAAAAATCCATACAAAGAAAACGAAAAATTGGAAAAAAAAAAAACAGGAAGCTAACTCATTTTTCCTCTCTCTATCCCCATCCTCTCCCCTTAGACTTTATCCAATAATTTCGAGATTAGTTGATTGATGGGTGCTATGGCCACGAATAATTCAACGACGGCGTACGCCGCTTGGGAGGAGGTGTTGGTGTCGACGGAGAAGGGGCGGCGGGAGGTTCACTATTACCTCAAACGATGCGGCGGCGGCAGAGA...

XM_057909720.1
AACGGCGCTTCGAGGCTGAAGTTGAGGTCGAGACGGGAGGTCGTAGACTGGCTGGACTCAATAATTTCAGGAGTACTAAGCCAATTTCTAAGAGCTGGTTGAGAGACTCAGAAAATCCAAATTCCCTTTCTAGGCGAGCAGCATAATAGTTCTAGACAATTTGGAGGTGGGATGGATAGGAATTTAGATGATGACGTTATCGAGGATGTTATGAAGCAGAAGTTAGGTCAGTGTAAGGTTGAATCTACATGGTTAGGTTC...

CDS

3 records

下载 CDS FASTA

LOC130986331
ATGGGTGCTATGGCCACGAATAATTCAACGACGGCGTACGCCGCTTGGGAGGAGGTGTTGGTGTCGACGGAGAAGGGGCGGCGGGAGGTTCACTATTACCTCAAACGATGCGGCGGCGGCAGAGATCTGGTTGTTGTGGGGAAGGAGAAGAGCGCTAGGCATATGTCGTATCATTACACGATTAGAGATAACAAATTGACGCCCTCCATTTTGAACGGCGCTTCGAGGCTGAAGTTGAGGTCGAGACGGGAGGTCGTAGA...

LOC130986331
ATGGATAGGAATTTAGATGATGACGTTATCGAGGATGTTATGAAGCAGAAGTTAGGTCAGTGTAAGGTTGAATCTACATGGTTAGGTTCTTCTTGGACGTGCCGGAAAAGGCGGGCGCATTATCAGTCATTCTGTCGCAATGGAGCTGTGATATCTGCTCAAGAGTTTGTGTATGTATTGGCTGAACAAGGCAAAAGACTTGTTGCTTACTTAGATGATATGTATGAAGATATCAGAGGCAACAAGATGGTTGTGGTACG...

Protein

3 records

下载 Protein FASTA

XP_057765701.1
MGAMATNNSTTAYAAWEEVLVSTEKGRREVHYYLKRCGGGRDLVVVGKEKSARHMSYHYTIRDNKLTPSILNGASRLKLRSRREVVDWLDSIISGEQHNSSRQFGGGMDRNLDDDVIEDVMKQKLGQCKVESTWLGSSWTCRKRRAHYQSFCRNGAVISAQEFVYVLAEQGKRLVAYLDDMYEDIRGNKMVVVRWFHKIDEVGFVLPHDYNDREIFFSLCLQDLSIECIDGLATVLSPEHYEKYISEATNTVLMPFVCCK...

XP_057765702.1
MDRNLDDDVIEDVMKQKLGQCKVESTWLGSSWTCRKRRAHYQSFCRNGAVISAQEFVYVLAEQGKRLVAYLDDMYEDIRGNKMVVVRWFHKIDEVGFVLPHDYNDREIFFSLCLQDLSIECIDGLATVLSPEHYEKYISEATNTVLMPFVCCKLFDNDDVKPFDITRVKGYWKQEIFRKSNRIGEAVGLRPNKRIRWSKESDMYSKSPDNGESVVTSLRDFSGSYLECKVGVRKGSKKEHGSYVSLSGRDNAARRKSEQY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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