Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001740`

染色体: Chr05 坐标: 16815950-16824089 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001740`
名称	SmilChr05G001740
描述	zinc finger protein BRUTUS
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	16815950 - 16824089 / `-`

ID 对照

NCBI Gene ID	`LOC130986410`
GeneID	`130986410`
locus_tag	`-`
NCBI Name	`LOC130986410`
原始查询	`SmilChr05G001740`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein BRUTUS
产物	zinc finger protein BRUTUS
Arabidopsis	`AT3G18290` (BTS) zinc finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821357] identity=62.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0689451` (OsHRZ1) - identity=63.6; qcov=1.03; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF01814 (Hemerythrin); PF05495 (zf-CHY); PF13639 (zf-RING_2); PF14599 (zinc_ribbon_6)
InterPro	-
eggNOG	-
NR	GeneID:130986410

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057765794.1`
2	Cytoplasm	细胞质	0.60000	`XP_057765794.1`
3	Nucleus	细胞核	0.20000	`XP_057765794.1`
4	Chromosome	染色体	0.00000	`XP_057765794.1`
5	Centromere	着丝粒	0.00000	`XP_057765794.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:16817979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:16818654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:16819464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:16819902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr5:16820208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B55,C2,C35,C72,C82
`Chr5:16821199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr5:16821413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B52,C29,C7,C86
`Chr5:16822001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr5:16822731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:16823774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B120,B27,B48,C2,C34
`Chr5:16823788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,C56
`Chr5:16823808`	`CA`	`C`	1bp_deletion	frameshift_variant	43	A14,A19,A20,A4,A6,A7,B100,B102,B109,B121,B131,B132,B133,B134,B19,B24,B33,B43,B45,B48,B51,B69,B70,B81,B87,C12,C13,C15,C17,C31,C33,C34,C38,C42,C44,C57,C76,C81,C84,C85,C87,D5,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765794.1

1219 aa

610

1219

Hemerythrin

zf-CHY

zf-RING_2

zinc_ribbon_6

PF01814 Hemerythrin 38-170 aa PF01814 Hemerythrin 293-423 aa PF01814 Hemerythrin 631-729 aa PF05495 zf-CHY 975-1043 aa PF13639 zf-RING_2 1103-1145 aa PF14599 zinc_ribbon_6 1151-1208 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765794.1`	Pfam	`PF01814`	Hemerythrin	Domain	38	170	1.1e-28	101.0	Hemerythrin HHE cation binding domain
`XP_057765794.1`	Pfam	`PF01814`	Hemerythrin	Domain	293	423	1.1e-28	101.0	Hemerythrin HHE cation binding domain
`XP_057765794.1`	Pfam	`PF01814`	Hemerythrin	Domain	631	729	1.1e-28	101.0	Hemerythrin HHE cation binding domain
`XP_057765794.1`	Pfam	`PF05495`	zf-CHY	Domain	975	1043	2.9e-19	70.0	CHY zinc finger
`XP_057765794.1`	Pfam	`PF13639`	zf-RING_2	Domain	1103	1145	1.3e-06	29.3	Ring finger domain
`XP_057765794.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	1151	1208	3.2e-23	82.2	Zinc-ribbon

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909811.1
GATTCCTCGCTTCATTTTCTCCTCAGGTAAAAGAAGAAAAATAGAAAAATAAAGAGAATTTATAGAGAGAGAAAGTTCCCGAGGGTGGGAGAAAATTCCTAAACAAAAAGGGACCTCTTTTGTTTTCCTTTTCCGGAGGCGTTGTATGAGCAGATGGCGACGCCGGGGATACAGAACGGCGGCGTTTCCGTGATGGCGGCCGCGCCGACGGTGGCGCCTGTAGATCAGAACGGCCGCTCGGCGGCCTCGCCGAGGCTGTC...

CDS

1 records

下载 CDS FASTA

LOC130986410
ATGGCGACGCCGGGGATACAGAACGGCGGCGTTTCCGTGATGGCGGCCGCGCCGACGGTGGCGCCTGTAGATCAGAACGGCCGCTCGGCGGCCTCGCCGAGGCTGTCGTCTCCGATTAGGATCTTTTTGTTCTTCCACAAGGCGATTCGAGCAGAGCTGGATGGCCTTCACATGACTGCCTTGGCTTTGGCGACGAATGGAAGCGGCGGAGACATCAAGCAATTGATGGAGAAGTGTCATTTCTTAAGGTCAATTTACAA...

Protein

1 records

下载 Protein FASTA

XP_057765794.1
MATPGIQNGGVSVMAAAPTVAPVDQNGRSAASPRLSSPIRIFLFFHKAIRAELDGLHMTALALATNGSGGDIKQLMEKCHFLRSIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGESVLFDQLFTLLGNDMKNEESYKRELASCTGALQTSISQHMSKEEEQVFPLLSEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISPDERQDMRKCLHRIIPDERLLQQIIFNWMDGVKVCNKRKRCEDVPRLSTSLVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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