当前解析结果
SmilChr05G001754| 统一新 Gene ID | SmilChr05G001754 |
|---|---|
| 名称 | SmilChr05G001754 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17075352 - 17087424 / - |
| NCBI Gene ID | LOC130986416 |
|---|---|
| GeneID | 130986416 |
| locus_tag | - |
| NCBI Name | LOC130986416 |
| 原始查询 | SmilChr05G001754 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| Arabidopsis | AT1G25390 (AT1G25390)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839125] identity=47.3; qcov=0.991; evalue=1.35e-173; confidence=high |
| Rice | Os01g0689900 (OsWAK10)- identity=56.6; qcov=0.622; evalue=6.47e-149; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986416 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765802.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765802.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765802.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765802.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765802.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17076586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B69,C16,C33 |
Chr5:17076997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,B3,B80,C48 |
Chr5:17077012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr5:17077017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B136,B21,B3,B80,C69 |
Chr5:17077219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr5:17077283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,A16,A5,B134,C56 |
Chr5:17077316 |
A |
ATC |
2bp_insertion | frameshift_variant | 17 | B109,B113,B134,B137,B138,B17,B23,B36,B45,B5,B83,B9,C10,C38,C4,C40,D3 |
Chr5:17077318 |
ATT |
A |
2bp_deletion | frameshift_variant | 17 | B109,B113,B134,B137,B138,B17,B23,B36,B45,B5,B83,B9,C10,C38,C4,C40,D3 |
Chr5:17077499 |
T |
TC |
1bp_insertion | stop_gained,frameshift_variant | 6 | A23,B44,B69,C59,C73,C77 |
Chr5:17077595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr5:17079243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,A5 |
Chr5:17079358 |
G |
GT |
1bp_insertion | frameshift_variant | 15 | A14,A15,B132,B18,B22,B3,B56,B61,B64,B66,B7,B91,C11,C38,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765802.1PF13947
GUB_WAK_bind 33-96 aa
PF14380
WAK_assoc 153-246 aa
PF00069
Pkinase 335-601 aa
PF07714
PK_Tyr_Ser-Thr 335-604 aa
XP_057765803.1PF00069
Pkinase 317-583 aa
PF07714
PK_Tyr_Ser-Thr 317-586 aa
XP_057765804.1PF00069
Pkinase 315-581 aa
PF07714
PK_Tyr_Ser-Thr 315-584 aa
XP_057765805.1PF14380
WAK_assoc 181-247 aa
PF00069
Pkinase 333-599 aa
PF07714
PK_Tyr_Ser-Thr 333-602 aa
XP_057765806.1PF00069
Pkinase 314-580 aa
PF07714
PK_Tyr_Ser-Thr 314-583 aa
XP_057765808.1PF00069
Pkinase 311-577 aa
PF07714
PK_Tyr_Ser-Thr 311-580 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765802.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 33 | 96 | 6.7e-13 | 49.5 | Wall-associated receptor kinase galacturonan-binding |
XP_057765802.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 153 | 246 | 9.1e-18 | 65.5 | Wall-associated receptor kinase C-terminal |
XP_057765802.1 |
Pfam | PF00069 |
Pkinase | Domain | 335 | 601 | 3.2e-50 | 171.7 | Protein kinase domain |
XP_057765802.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 335 | 604 | 3.2e-49 | 168.3 | Protein tyrosine and serine/threonine kinase |
XP_057765803.1 |
Pfam | PF00069 |
Pkinase | Domain | 317 | 583 | 3.1e-50 | 171.7 | Protein kinase domain |
XP_057765803.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 317 | 586 | 3.1e-49 | 168.3 | Protein tyrosine and serine/threonine kinase |
XP_057765804.1 |
Pfam | PF00069 |
Pkinase | Domain | 315 | 581 | 3.1e-50 | 171.8 | Protein kinase domain |
XP_057765804.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 315 | 584 | 3.1e-49 | 168.3 | Protein tyrosine and serine/threonine kinase |
XP_057765805.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 181 | 247 | 6.3e-06 | 27.5 | Wall-associated receptor kinase C-terminal |
XP_057765805.1 |
Pfam | PF00069 |
Pkinase | Domain | 333 | 599 | 3.1e-50 | 171.7 | Protein kinase domain |
XP_057765805.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 333 | 602 | 2.9e-49 | 168.4 | Protein tyrosine and serine/threonine kinase |
XP_057765806.1 |
Pfam | PF00069 |
Pkinase | Domain | 314 | 580 | 2.1e-50 | 172.3 | Protein kinase domain |
XP_057765806.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 314 | 583 | 2.5e-49 | 168.7 | Protein tyrosine and serine/threonine kinase |
XP_057765808.1 |
Pfam | PF00069 |
Pkinase | Domain | 311 | 577 | 3e-50 | 171.8 | Protein kinase domain |
XP_057765808.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 311 | 580 | 3e-49 | 168.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。