Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001761

染色体: Chr05 坐标: 17320208-17321899 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001761
名称SmilChr05G001761
描述PR5-like receptor kinase
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向17320208 - 17321899 / +

ID 对照

NCBI Gene IDLOC130986427
GeneID130986427
locus_tag-
NCBI NameLOC130986427
原始查询SmilChr05G001761

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述PR5-like receptor kinase
产物PR5-like receptor kinase
ArabidopsisAT1G70250 (AT1G70250)
receptor serine/threonine kinase [Source:NCBI gene (formerly Entrezgene);Acc:843361]
identity=53.2; qcov=0.977; evalue=6.26e-130; confidence=high
RiceOs04g0177000 (OsRLCK132)
-
identity=54.3; qcov=0.943; evalue=1.21e-138; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:130986427

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057765814.1
2 Nucleus 细胞核 0.00000 XP_057765814.1
3 Chromosome 染色体 0.00000 XP_057765814.1
4 Centromere 着丝粒 0.00000 XP_057765814.1
5 Chromatin 染色质 0.00000 XP_057765814.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:17320729 C T EMS_canonical_SNV CDS_variant 1 D10
Chr5:17320782 C T EMS_canonical_SNV CDS_variant 4 B73,C21,C31,D11
Chr5:17320824 G A EMS_canonical_SNV CDS_variant 2 B56,B64
Chr5:17320846 C T EMS_canonical_SNV CDS_variant 3 A23,B11,C34
Chr5:17320879 C T EMS_canonical_SNV CDS_variant 4 A1,A5,B23,B9
Chr5:17321036 G A EMS_canonical_SNV CDS_variant 2 B101,C21
Chr5:17321041 C T EMS_canonical_SNV CDS_variant 1 D5
Chr5:17321070 G A EMS_canonical_SNV CDS_variant 5 B59,B62,C39,C45,C47
Chr5:17321105 G A EMS_canonical_SNV CDS_variant 2 B59,B89
Chr5:17321128 C T EMS_canonical_SNV CDS_variant 3 A16,B73,C21
Chr5:17321131 G A EMS_canonical_SNV CDS_variant 1 B41
Chr5:17321140 C T EMS_canonical_SNV CDS_variant 1 B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765814.1
385 aa
N
1
192
385
PK_Tyr_Ser-Thr
Pkinase
C
PF07714 PK_Tyr_Ser-Thr 77-354 aa PF00069 Pkinase 78-352 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765814.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 77 354 2.1e-43 149.2 Protein tyrosine and serine/threonine kinase
XP_057765814.1 Pfam PF00069 Pkinase Domain 78 352 7.3e-46 157.4 Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057909831.1
CTGTTTATAGATCTTTAGTTATTTAGTACTATTAGCTAGGTTGATCAGTTTCCAATAATAAAGGACTAAAATCTTTGCAACGAGGTAGTTAGAAAAAGATTAGTTTTTTGTTGTTTCACCTAAAATCTAAAGGCTAATGTTGAATTTATTTGCAGGAAATAGACTTCAAAATATCCTTTTTATAGCTGGTATCACCATAACCGCTCTTACATCCTTTTTCATAATTATATTCGTTTTCATCCGGAGGAAGCGTGCAAAGG...

CDS

1 records

下载 CDS FASTA
LOC130986427
ATGTTGAATTTATTTGCAGGAAATAGACTTCAAAATATCCTTTTTATAGCTGGTATCACCATAACCGCTCTTACATCCTTTTTCATAATTATATTCGTTTTCATCCGGAGGAAGCGTGCAAAGGCAAAACAAGAGCAGAATAGAGACATTGAACTCTTTCTCAAGAACAATGGAAATCTTGCACCAATGAGATACAAATACTCTAGTATCAAGAAAATGACGAACTCATTTACTGAAAACTTGGGAAGAGGAGGGTTTGG...

Protein

1 records

下载 Protein FASTA
XP_057765814.1
MLNLFAGNRLQNILFIAGITITALTSFFIIIFVFIRRKRAKAKQEQNRDIELFLKNNGNLAPMRYKYSSIKKMTNSFTENLGRGGFGSVYKGQFPDGHLVAVKVLNESNENGEDFMNEVASISRTSHINIVTLLGFCFEGSKRALIYDFMPNGSLEKFVCNNAPSSAESRLGWDKLFEIALGIARGLEYLHQGCNTRILHLDIKPQNILLDKDMNPRISDFGLAKLCPNRSSIVSMMVARGTIGYIAPEVFSRNFGEVSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器