当前解析结果
SmilChr05G001764| 统一新 Gene ID | SmilChr05G001764 |
|---|---|
| 名称 | SmilChr05G001764 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17359681 - 17362463 / + |
| NCBI Gene ID | LOC130986421 |
|---|---|
| GeneID | 130986421 |
| locus_tag | - |
| NCBI Name | LOC130986421 |
| 原始查询 | SmilChr05G001764 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 |
| Arabidopsis | AT1G66910 (AT1G66910)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843009] identity=45.7; qcov=0.985; evalue=1.57e-120; confidence=high |
| Rice | Os04g0177000 (OsRLCK132)- identity=53.8; qcov=0.792; evalue=1.48e-126; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986421 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765811.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765811.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765811.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765811.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765811.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17360298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr5:17360329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B55,B60,C72 |
Chr5:17360378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B63,B95,C13,C36 |
Chr5:17360383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B63,B95,C13,C36 |
Chr5:17360400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C36 |
Chr5:17360420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B63,B95,C13,C36,D8 |
Chr5:17360434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B63,B95,C13,C36,D8 |
Chr5:17360834 |
AT |
A |
1bp_deletion | frameshift_variant | 104 | A10,A14,A15,A16,A19,A22,A23,A25,A4,A5,A8,A9,B1,B101,B104,B106,B108,B111,B113,B115,B119,B123,B128,B129,B13,B130,B131,B132,B133,B135,B136,B139,B14,B17,B18,B19,B2,B21,B25,B28,B3,B41,B51,B53,B57,B58,B61,B64,B7,B70,B71,B75,B76,B79,B8,B80,B81,B84,B87,B88,B90,B91,B92,B94,B97,B98,C1,C11,C17,C19,C20,C22,C23,C25,C27,C28,C3,C33,C35,C41,C44,C46,C5,C53,C56,C6,C62,C63,C64,C65,C66,C67,C69,C7,C70,C78,C79,C8,C81,C82,C85,D3,D7,D9 |
Chr5:17360842 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | B64 |
Chr5:17360842 |
C |
CG |
1bp_insertion | CDS_variant | 1 | B64 |
Chr5:17361247 |
TG |
T |
1bp_deletion | frameshift_variant | 24 | A21,A22,B10,B110,B112,B124,B16,B30,B36,B49,B6,B60,B66,B76,C2,C27,C35,C63,C64,C66,C82,C9,D10,D2 |
Chr5:17361433 |
AC |
A |
1bp_deletion | frameshift_variant | 9 | A2,A8,B112,B12,B35,C43,C58,C73,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765811.1PF07714
PK_Tyr_Ser-Thr 144-418 aa
PF00069
Pkinase 145-416 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765811.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 144 | 418 | 3.7e-39 | 135.3 | Protein tyrosine and serine/threonine kinase |
XP_057765811.1 |
Pfam | PF00069 |
Pkinase | Domain | 145 | 416 | 3.7e-44 | 151.8 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。