Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001765

染色体: Chr05 坐标: 17369109-17372553 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001765
名称SmilChr05G001765
描述probable protein phosphatase 2C 15
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向17369109 - 17372553 / -

ID 对照

NCBI Gene IDLOC130986442
GeneID130986442
locus_tag-
NCBI NameLOC130986442
原始查询SmilChr05G001765

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable protein phosphatase 2C 15
产物probable protein phosphatase 2C 15
ArabidopsisAT1G68410 (AT1G68410)
Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:843170]
identity=76.9; qcov=1.02; evalue=0; confidence=high
RiceOs07g0690400 (OsPP99)
-
identity=66.5; qcov=0.965; evalue=0; confidence=high
GOGO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation)
KEGG-
PfamPF00481 (PP2C)
InterPro-
eggNOG-
NRGeneID:130986442

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057765831.1
2 Cell membrane 细胞膜 0.60000 XP_057765831.1
3 Cytoplasm 细胞质 0.20000 XP_057765831.1
4 Nucleus 细胞核 0.00000 XP_057765831.1
5 Chromosome 染色体 0.00000 XP_057765831.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:17369385 C T EMS_canonical_SNV CDS_variant 3 A18,C43,C73
Chr5:17369393 G A EMS_canonical_SNV CDS_variant 3 A1,B84,C83
Chr5:17369430 C T EMS_canonical_SNV CDS_variant 2 C43,C75
Chr5:17369474 C T EMS_canonical_SNV CDS_variant 5 B3,B80,C11,C74,D9
Chr5:17369483 C T EMS_canonical_SNV CDS_variant 1 B35
Chr5:17369486 G A EMS_canonical_SNV CDS_variant 2 A16,A5
Chr5:17369502 G A EMS_canonical_SNV CDS_variant 2 B31,C52
Chr5:17369503 G A EMS_canonical_SNV CDS_variant 3 A5,B59,B89
Chr5:17369529 C T EMS_canonical_SNV CDS_variant 3 A16,C52,C68
Chr5:17369847 C T EMS_canonical_SNV CDS_variant 2 B103,B104
Chr5:17369853 C CT 1bp_insertion frameshift_variant 4 B102,B35,B77,C71
Chr5:17369853 C CT 1bp_insertion CDS_variant 4 B102,B35,B77,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765831.1
427 aa
N
1
214
427
PP2C
C
PF00481 PP2C 61-265 aa
XP_057765832.1
427 aa
N
1
214
427
PP2C
C
PF00481 PP2C 61-265 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765831.1 Pfam PF00481 PP2C Family 61 265 3.9e-32 112.6 Protein phosphatase 2C
XP_057765832.1 Pfam PF00481 PP2C Family 61 265 3.9e-32 112.6 Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909849.1
TATCTTTGTTAGCCTGTCTTGCTGATCTGTATTCCCTTATAGATAGATTAATTCTCAACACCTTAATTTCATTGCGGAATGTTTTTCTTTTTTTTTTTTAATTTTAATTTTCTGTTTACGTAATTAAAAGTTAATAAGTATTGGGGTTCTTGATGATTGGGGGGTCCTTACAGTTCATTCTTTGTCATCAATCCGCGTTTGGTCCATTTCCGTGTGAATTTTGCCTCCCATCTTTTTATATTCCTTCAATTTTCTAGTGG...
XM_057909848.1
TTAGCCTGTCTTGCTGATCTGTATTCCCTTATAGATAGATTAATTCTCAACACCTTAATTTCATTGCGGAATGTTTTTCTTTTTTTTTTTTAATTTTAATTTTCTGTTTACGTAATTAAAAGTTAATAAGTATTGGGGTTCTTGATGATTGGGGGGTCCTTACAGTTCATTCTTTGTCATCAATCCGCGTTTGGTCCATTTCCGTGTGAATTTTGCCTCCCATCTTTTTATATTCCTTCAATTTTCTAGTGGATTTGTTT...

CDS

2 records

下载 CDS FASTA
LOC130986442
ATGGGGTCGAGGGGAGATAGATATGAACATCATGATCTTGTGCCATTAGCTGCCCTCATAAATAGGGAGTTGAGGAATGAGAAAATGGAGAAGCCCGCTGTGAGATATGGCTCTGCAGCTCAGTCGAGGAAAGGGGAGGATTATTTCTTGATAAAGACTGATTGCCAGAGAGTTCCTGGAAATCCATCTACGTCGTTCTCTGTTTTTGGAATCTTTGATGGGCATAATGGGAGTGCAGCTGCAATATTTTCGAGAGACCA...
LOC130986442
ATGGGGTCGAGGGGAGATAGATATGAACATCATGATCTTGTGCCATTAGCTGCCCTCATAAATAGGGAGTTGAGGAATGAGAAAATGGAGAAGCCCGCTGTGAGATATGGCTCTGCAGCTCAGTCGAGGAAAGGGGAGGATTATTTCTTGATAAAGACTGATTGCCAGAGAGTTCCTGGAAATCCATCTACGTCGTTCTCTGTTTTTGGAATCTTTGATGGGCATAATGGGAGTGCAGCTGCAATATTTTCGAGAGACCA...

Protein

2 records

下载 Protein FASTA
XP_057765831.1
MGSRGDRYEHHDLVPLAALINRELRNEKMEKPAVRYGSAAQSRKGEDYFLIKTDCQRVPGNPSTSFSVFGIFDGHNGSAAAIFSRDHLLNYVLNAMPRGLGRDEWLHALPRALVAGFVKTDKEFQAKGKTSGTTATFVIIDGWTVTVASVGDSRCILDAQGGGVSILTVDHRLEENAEERERVTASGGEVGRLSIFGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSSTGGRLIIASDGVWDALSSEMA...
XP_057765832.1
MGSRGDRYEHHDLVPLAALINRELRNEKMEKPAVRYGSAAQSRKGEDYFLIKTDCQRVPGNPSTSFSVFGIFDGHNGSAAAIFSRDHLLNYVLNAMPRGLGRDEWLHALPRALVAGFVKTDKEFQAKGKTSGTTATFVIIDGWTVTVASVGDSRCILDAQGGGVSILTVDHRLEENAEERERVTASGGEVGRLSIFGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSSTGGRLIIASDGVWDALSSEMA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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