当前解析结果
SmilChr05G001765| 统一新 Gene ID | SmilChr05G001765 |
|---|---|
| 名称 | SmilChr05G001765 |
| 描述 | probable protein phosphatase 2C 15 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17369109 - 17372553 / - |
| NCBI Gene ID | LOC130986442 |
|---|---|
| GeneID | 130986442 |
| locus_tag | - |
| NCBI Name | LOC130986442 |
| 原始查询 | SmilChr05G001765 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable protein phosphatase 2C 15 |
| 产物 | probable protein phosphatase 2C 15 |
| Arabidopsis | AT1G68410 (AT1G68410)Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:843170] identity=76.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0690400 (OsPP99)- identity=66.5; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation) |
| KEGG | - |
| Pfam | PF00481 (PP2C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986442 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057765831.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057765831.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057765831.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765831.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765831.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17369385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,C43,C73 |
Chr5:17369393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B84,C83 |
Chr5:17369430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C43,C75 |
Chr5:17369474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B3,B80,C11,C74,D9 |
Chr5:17369483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr5:17369486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,A5 |
Chr5:17369502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,C52 |
Chr5:17369503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B59,B89 |
Chr5:17369529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,C52,C68 |
Chr5:17369847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B103,B104 |
Chr5:17369853 |
C |
CT |
1bp_insertion | frameshift_variant | 4 | B102,B35,B77,C71 |
Chr5:17369853 |
C |
CT |
1bp_insertion | CDS_variant | 4 | B102,B35,B77,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765831.1PF00481
PP2C 61-265 aa
XP_057765832.1PF00481
PP2C 61-265 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765831.1 |
Pfam | PF00481 |
PP2C | Family | 61 | 265 | 3.9e-32 | 112.6 | Protein phosphatase 2C |
XP_057765832.1 |
Pfam | PF00481 |
PP2C | Family | 61 | 265 | 3.9e-32 | 112.6 | Protein phosphatase 2C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。