当前解析结果
SmilChr05G001768| 统一新 Gene ID | SmilChr05G001768 |
|---|---|
| 名称 | SmilChr05G001768 |
| 描述 | zinc finger protein 4-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17393084 - 17393548 / + |
| NCBI Gene ID | LOC131025586 |
|---|---|
| GeneID | 131025586 |
| locus_tag | - |
| NCBI Name | LOC131025586 |
| 原始查询 | SmilChr05G001768 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein 4-like |
| 产物 | zinc finger protein 4-like |
| Arabidopsis | AT1G68360 (AT1G68360)C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843165] identity=73; qcov=0.409; evalue=2.42e-25; confidence=low |
| Rice | Os01g0512700- identity=78.7; qcov=0.305; evalue=1.88e-20; confidence=low |
| GO | GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0009736 (cytokinin-activated signaling pathway); GO:0009740 (gibberellic acid mediated signaling pathway); GO:0010026 (trichome differentiation); GO:0010090 (trichome morphogenesis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025586 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811368.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811368.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811368.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811368.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811368.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17393090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C69 |
Chr5:17393129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B56,C34,C71 |
Chr5:17393151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,C61 |
Chr5:17393161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B23,B75,C28 |
Chr5:17393185 |
CT |
C |
1bp_deletion | frameshift_variant | 8 | A7,B134,B33,B42,C21,C25,C32,C37 |
Chr5:17393201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr5:17393231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B113,B14 |
Chr5:17393249 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B113 |
Chr5:17393249 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B113 |
Chr5:17393279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B31,C28 |
Chr5:17393297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B51 |
Chr5:17393301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。