当前解析结果
SmilChr05G001770| 统一新 Gene ID | SmilChr05G001770 |
|---|---|
| 名称 | SmilChr05G001770 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17404387 - 17406396 / - |
| NCBI Gene ID | LOC131025587 |
|---|---|
| GeneID | 131025587 |
| locus_tag | - |
| NCBI Name | LOC131025587 |
| 原始查询 | SmilChr05G001770 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29; qcov=0.928; evalue=6.37e-80; confidence=low |
| Rice | Os06g0166100- identity=34.1; qcov=0.815; evalue=2.15e-99; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025587 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811369.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811369.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811369.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811369.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811369.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17404479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C33 |
Chr5:17404632 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B92,C16 |
Chr5:17404632 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B92,C16 |
Chr5:17404642 |
ACT |
A |
2bp_deletion | frameshift_variant | 5 | A22,B122,B123,B31,B54 |
Chr5:17404642 |
ACT |
A |
2bp_deletion | CDS_variant | 5 | A22,B122,B123,B31,B54 |
Chr5:17404668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,D3 |
Chr5:17404670 |
G |
A |
EMS_canonical_SNV | stop_gained | 41 | A11,A15,A2,A20,A21,B10,B11,B132,B134,B140,B3,B42,B47,B5,B55,B58,B65,B69,B73,B74,B80,B91,C2,C22,C24,C35,C39,C41,C42,C50,C56,C6,C67,C71,C72,C82,C86,D1,D11,D2,D6 |
Chr5:17404705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B99,C10,C51 |
Chr5:17404716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B1,B104,B65 |
Chr5:17404717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B105,C19,C61 |
Chr5:17404739 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | A19,B129,C27 |
Chr5:17404739 |
T |
TC |
1bp_insertion | CDS_variant | 3 | A19,B129,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811369.1PF21056
ZSWIM1-3_RNaseH-like 99-208 aa
PF10551
MULE 125-219 aa
PF04434
SWIM 414-441 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811369.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 99 | 208 | 2e-07 | 31.7 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057811369.1 |
Pfam | PF10551 |
MULE | Domain | 125 | 219 | 2.8e-23 | 82.8 | MULE transposase domain |
XP_057811369.1 |
Pfam | PF04434 |
SWIM | Domain | 414 | 441 | 4.3e-09 | 36.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。