当前解析结果
SmilChr05G001773| 统一新 Gene ID | SmilChr05G001773 |
|---|---|
| 名称 | SmilChr05G001773 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17419875 - 17431620 / - |
| NCBI Gene ID | LOC130986448 |
|---|---|
| GeneID | 130986448 |
| locus_tag | - |
| NCBI Name | LOC130986448 |
| 原始查询 | SmilChr05G001773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| Arabidopsis | AT1G25390 (AT1G25390)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839125] identity=47.9; qcov=1; evalue=4.31e-176; confidence=high |
| Rice | Os01g0689900 (OsWAK10)- identity=42.9; qcov=1.02; evalue=8.78e-153; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986448 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765838.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765838.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765838.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765838.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765838.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17420717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C23,C6 |
Chr5:17420845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr5:17420885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,C15,C40 |
Chr5:17421543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,B95 |
Chr5:17421646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C4,C87,D11 |
Chr5:17421775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B109,B45,B9,C38,C4 |
Chr5:17421805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:17421844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr5:17421903 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C21 |
Chr5:17421903 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C21 |
Chr5:17421919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C45 |
Chr5:17421957 |
CAA |
C |
2bp_deletion | frameshift_variant | 5 | A15,B136,B21,B3,B7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765838.1PF13947
GUB_WAK_bind 33-96 aa
PF14380
WAK_assoc 153-246 aa
PF00069
Pkinase 335-601 aa
PF07714
PK_Tyr_Ser-Thr 335-604 aa
XP_057765839.1PF14380
WAK_assoc 178-247 aa
PF00069
Pkinase 333-599 aa
PF07714
PK_Tyr_Ser-Thr 333-602 aa
XP_057765840.1PF00069
Pkinase 314-580 aa
PF07714
PK_Tyr_Ser-Thr 314-583 aa
XP_057765841.1PF00069
Pkinase 313-579 aa
PF07714
PK_Tyr_Ser-Thr 313-582 aa
XP_057765843.1PF00069
Pkinase 312-578 aa
PF07714
PK_Tyr_Ser-Thr 312-581 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765838.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 33 | 96 | 6.7e-13 | 49.5 | Wall-associated receptor kinase galacturonan-binding |
XP_057765838.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 153 | 246 | 2e-17 | 64.4 | Wall-associated receptor kinase C-terminal |
XP_057765838.1 |
Pfam | PF00069 |
Pkinase | Domain | 335 | 601 | 3.3e-50 | 171.7 | Protein kinase domain |
XP_057765838.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 335 | 604 | 3.2e-49 | 168.3 | Protein tyrosine and serine/threonine kinase |
XP_057765839.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 178 | 247 | 4.6e-06 | 27.9 | Wall-associated receptor kinase C-terminal |
XP_057765839.1 |
Pfam | PF00069 |
Pkinase | Domain | 333 | 599 | 3.1e-50 | 171.7 | Protein kinase domain |
XP_057765839.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 333 | 602 | 3.1e-49 | 168.3 | Protein tyrosine and serine/threonine kinase |
XP_057765840.1 |
Pfam | PF00069 |
Pkinase | Domain | 314 | 580 | 3e-50 | 171.8 | Protein kinase domain |
XP_057765840.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 314 | 583 | 3e-49 | 168.4 | Protein tyrosine and serine/threonine kinase |
XP_057765841.1 |
Pfam | PF00069 |
Pkinase | Domain | 313 | 579 | 3e-50 | 171.8 | Protein kinase domain |
XP_057765841.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 313 | 582 | 3.1e-49 | 168.3 | Protein tyrosine and serine/threonine kinase |
XP_057765843.1 |
Pfam | PF00069 |
Pkinase | Domain | 312 | 578 | 2e-50 | 172.3 | Protein kinase domain |
XP_057765843.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 312 | 581 | 1.8e-49 | 169.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。