Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001776`

染色体: Chr05 坐标: 17471807-17476271 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001776`
名称	SmilChr05G001776
描述	pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	17471807 - 17476271 / `+`

ID 对照

NCBI Gene ID	`LOC130986450`
GeneID	`130986450`
locus_tag	`-`
NCBI Name	`LOC130986450`
原始查询	`SmilChr05G001776`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like
产物	pentatricopeptide repeat-containing protein At4g39620%2C chloroplastic-like
Arabidopsis	`AT4G39620` (EMB2453) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830116] identity=70.1; qcov=0.826; evalue=0; confidence=high
Rice	`Os02g0750400` - identity=60.9; qcov=0.37; evalue=5.4e-73; confidence=low
GO	GO:0003729 (mRNA binding); GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130986450

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765844.1`
2	Mitochondrion	线粒体	0.40000	`XP_057765844.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057765845.1`
4	Nucleus	细胞核	0.00000	`XP_057765845.1`
5	Chromosome	染色体	0.00000	`XP_057765845.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:17472441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B14,B91,C5
`Chr5:17472563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B46,D11
`Chr5:17473253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:17473518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,B5
`Chr5:17473801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:17473846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:17473903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B59,B69,B9,C56
`Chr5:17474043`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B117,B46,D11
`Chr5:17474043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B46,D11
`Chr5:17474044`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B117,B46,D11
`Chr5:17474044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B46,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765844.1

518 aa

259

518

TPR_24

PPR

PPR_2

PPR_3

PPR_2

PPR_3

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR

PF23276 TPR_24 123-238 aa PF01535 PPR 140-169 aa PF13041 PPR_2 140-183 aa PF13812 PPR_3 141-182 aa PF13041 PPR_2 171-224 aa PF13812 PPR_3 176-223 aa PF13812 PPR_3 210-260 aa PF13041 PPR_2 211-257 aa PF01535 PPR 214-240 aa PF13812 PPR_3 235-295 aa PF13041 PPR_2 247-293 aa PF01535 PPR 249-279 aa PF13812 PPR_3 270-330 aa PF13041 PPR_2 281-328 aa PF01535 PPR 284-312 aa PF13812 PPR_3 318-364 aa PF01535 PPR 320-347 aa PF01535 PPR 354-383 aa PF01535 PPR 390-413 aa

XP_057765845.1

511 aa

256

511

TPR_24

PPR

PPR_2

PPR_3

PPR_2

PPR_3

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765844.1`	Pfam	`PF23276`	TPR_24	Repeat	123	238	6.5e-14	52.7	Pentatricopeptide repeat-containing protein
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	140	169	4.4e-41	137.0	PPR repeat
`XP_057765844.1`	Pfam	`PF13041`	PPR_2	Repeat	140	183	3.9e-50	168.4	PPR repeat family
`XP_057765844.1`	Pfam	`PF13812`	PPR_3	Repeat	141	182	1e-35	122.3	Pentatricopeptide repeat domain
`XP_057765844.1`	Pfam	`PF13041`	PPR_2	Repeat	171	224	3.9e-50	168.4	PPR repeat family
`XP_057765844.1`	Pfam	`PF13812`	PPR_3	Repeat	176	223	1e-35	122.3	Pentatricopeptide repeat domain
`XP_057765844.1`	Pfam	`PF13812`	PPR_3	Repeat	210	260	1e-35	122.3	Pentatricopeptide repeat domain
`XP_057765844.1`	Pfam	`PF13041`	PPR_2	Repeat	211	257	3.9e-50	168.4	PPR repeat family
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	214	240	4.4e-41	137.0	PPR repeat
`XP_057765844.1`	Pfam	`PF13812`	PPR_3	Repeat	235	295	1e-35	122.3	Pentatricopeptide repeat domain
`XP_057765844.1`	Pfam	`PF13041`	PPR_2	Repeat	247	293	3.9e-50	168.4	PPR repeat family
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	249	279	4.4e-41	137.0	PPR repeat
`XP_057765844.1`	Pfam	`PF13812`	PPR_3	Repeat	270	330	1e-35	122.3	Pentatricopeptide repeat domain
`XP_057765844.1`	Pfam	`PF13041`	PPR_2	Repeat	281	328	3.9e-50	168.4	PPR repeat family
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	284	312	4.4e-41	137.0	PPR repeat
`XP_057765844.1`	Pfam	`PF13812`	PPR_3	Repeat	318	364	1e-35	122.3	Pentatricopeptide repeat domain
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	320	347	4.4e-41	137.0	PPR repeat
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	354	383	4.4e-41	137.0	PPR repeat
`XP_057765844.1`	Pfam	`PF01535`	PPR	Repeat	390	413	4.4e-41	137.0	PPR repeat
`XP_057765845.1`	Pfam	`PF23276`	TPR_24	Repeat	123	238	6e-14	52.8	Pentatricopeptide repeat-containing protein
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	140	169	3.7e-41	137.2	PPR repeat
`XP_057765845.1`	Pfam	`PF13041`	PPR_2	Repeat	140	183	3.1e-50	168.8	PPR repeat family
`XP_057765845.1`	Pfam	`PF13812`	PPR_3	Repeat	141	182	8.3e-36	122.6	Pentatricopeptide repeat domain
`XP_057765845.1`	Pfam	`PF13041`	PPR_2	Repeat	171	224	3.1e-50	168.8	PPR repeat family
`XP_057765845.1`	Pfam	`PF13812`	PPR_3	Repeat	176	223	8.3e-36	122.6	Pentatricopeptide repeat domain
`XP_057765845.1`	Pfam	`PF13812`	PPR_3	Repeat	210	260	8.3e-36	122.6	Pentatricopeptide repeat domain
`XP_057765845.1`	Pfam	`PF13041`	PPR_2	Repeat	211	257	3.1e-50	168.8	PPR repeat family
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	214	240	3.7e-41	137.2	PPR repeat
`XP_057765845.1`	Pfam	`PF13812`	PPR_3	Repeat	235	295	8.3e-36	122.6	Pentatricopeptide repeat domain
`XP_057765845.1`	Pfam	`PF13041`	PPR_2	Repeat	247	293	3.1e-50	168.8	PPR repeat family
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	249	279	3.7e-41	137.2	PPR repeat
`XP_057765845.1`	Pfam	`PF13812`	PPR_3	Repeat	270	330	8.3e-36	122.6	Pentatricopeptide repeat domain
`XP_057765845.1`	Pfam	`PF13041`	PPR_2	Repeat	281	328	3.1e-50	168.8	PPR repeat family
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	284	312	3.7e-41	137.2	PPR repeat
`XP_057765845.1`	Pfam	`PF13812`	PPR_3	Repeat	318	364	8.3e-36	122.6	Pentatricopeptide repeat domain
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	320	347	3.7e-41	137.2	PPR repeat
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	354	383	3.7e-41	137.2	PPR repeat
`XP_057765845.1`	Pfam	`PF01535`	PPR	Repeat	390	413	3.7e-41	137.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009089271.1
ATAATAAGTTGAATTTATTACACATAATTTATATAGTAAAATTTGATTGACGGTTTATGAACGGCCACCCCTCGTCTTCATGTTGCAAACATGCTTCCGAAGCAATGATAACAAAATTACAATATGGATTTAGATATATTTGTGAATCATCATATTACTATATCTTTTCATTTCATGGTATTCGTGTTTCGTTAAACACCAAATTAATTTCTTCCAATTTCACAAATTTATCTCATCACAAGAATTCTGCCGCTTTCCGT...

XR_009089272.1
GGTTTATGAACGGCCACCCCTCGTCTTCATGTTGCAAACATGCTTCCGAAGCAATGATAACAAAATTACAATATGGATTTAGATATATTTGTGAATCATCATATTACTATATCTTTTCATTTCATGGTATTCGTGTTTCGTTAAACACCAAATTAATTTCTTCCAATTTCACAAATTTATCTCATCACAAGAATTCTGCCGCTTTCCGTCTGGGAACAAACACAAAAGTGGAAAGAGCGCTTCTCAGCCGCAAAGTAGCA...

CDS

2 records

下载 CDS FASTA

LOC130986450
ATGACGACGACCCCTCCTCTTCCCTTCGCGTCTGCCTCTCTGCAACGCTCCTCGGCGCCAAAACTGAGCTATACTTATGCCCCAATCCACTCTTCAACCCATCGCTCATACCCAATTTCAAGAATCCGAATGTGCGGGATGTCGGCCACACCCGAAAAGAAAACGGGTCCCAAAAAGACCCGCAAGAATATCAGTTCCTCTCCCTCTTCAGAAACTGAAGAATTGGTTCGATCAATCGTGAGGAATATCTCCGATAAGCA...

Protein

2 records

下载 Protein FASTA

XP_057765844.1
MTTTPPLPFASASLQRSSAPKLSYTYAPIHSSTHRSYPISRIRMCGMSATPEKKTGPKKTRKNISSSPSSETEELVRSIVRNISDKQPLLKTLNKYVQFVRTEHCFLLFEELGKSERWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQSRMAMWLFSEMRNSGCKPDTSVYNALITAHLHSRDKAKALAKAVSYFEKMKGMERCKPSIVTYNILLRAFAQAKNVDQVNALFKDLDESIVSADTFTFNGVMDAYGK...

XP_057765845.1
MTTTPPLPFASASLQRSSAPKLSYTYAPIHSSTHRSYPISRIRMCGMSATPEKKTGPKKTRKNISSSPSSETEELVRSIVRNISDKQPLLKTLNKYVQFVRTEHCFLLFEELGKSERWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQSRMAMWLFSEMRNSGCKPDTSVYNALITAHLHSRDKAKALAKAVSYFEKMKGMERCKPSIVTYNILLRAFAQAKNVDQVNALFKDLDESIVSADTFTFNGVMDAYGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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